Molecular dynamics simulations of DNA within a nanopore: arginine-phosphate tethering and a binding/sliding mechanism for translocation

scientific article published on 13 April 2011

Molecular dynamics simulations of DNA within a nanopore: arginine-phosphate tethering and a binding/sliding mechanism for translocation is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1021/BI101404N
P932PMC publication ID3390175
P698PubMed publication ID21428458
P5875ResearchGate publication ID50829897

P50authorHagan BayleyQ5638525
Syma KhalidQ43243869
Peter J BondQ59540068
P2093author name stringAndrew J Heron
Andrew T Guy
P2860cites workMultiple base-recognition sites in a biological nanopore: two heads are better than oneQ24598954
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Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathwayQ27733365
Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targetsQ27766367
A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6Q29617517
Outer membrane protein G: Engineering a quiet pore for biosensingQ30157686
Molecular simulations and lipid-protein interactions: potassium channels and other membrane proteinsQ30160097
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Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channelQ33933830
Deciphering ionic current signatures of DNA transport through a nanoporeQ34018554
Stochastic sensors inspired by biology.Q34091345
Nanopore DNA sequencing with MspA.Q34136224
Amazing stability of the arginine-phosphate electrostatic interactionQ34153970
Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential mapQ34190556
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Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal chargeQ37018765
Analysis of single nucleic acid molecules with protein nanoporesQ37772272
Molecular understanding of sterically controlled compound release through an engineered channel protein (FhuA)Q41841595
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Translocation of double-stranded DNA through membrane-adapted phi29 motor protein nanoporesQ42639482
Controllable synthetic molecular channels: biomimetic ammonia switchQ43226114
DNA and lipid bilayers: self-assembly and insertionQ43243792
Arginine-mediated RNA recognition: the arginine fork.Q44511258
Single-molecule detection of nitrogen mustards by covalent reaction within a protein nanoporeQ46620802
Functional expression of the alpha-hemolysin of Staphylococcus aureus in intact Escherichia coli and in cell lysates. Deletion of five C-terminal amino acids selectively impairs hemolytic activityQ48172608
Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systemsQ56750591
Molecular dynamics with coupling to an external bathQ57569060
Phospholipids and the origin of cationic gating charges in voltage sensorsQ59096345
Simulations of DNA coiling around a synthetic supramolecular cylinder that binds in the DNA major grooveQ82640444
Nanopore stochastic detection of a liquid explosive component and sensitizers using boromycin and an ionic liquid supporting electrolyteQ82833003
P433issue18
P407language of work or nameEnglishQ1860
P304page(s)3777-3783
P577publication date2011-04-13
P1433published inBiochemistryQ764876
P1476titleMolecular dynamics simulations of DNA within a nanopore: arginine-phosphate tethering and a binding/sliding mechanism for translocation
P478volume50

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cites work (P2860)
Q91740794An Overview of Molecular Modeling for Drug Discovery with Specific Illustrative Examples of Applications
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