| scholarly article | Q13442814 |
| P50 | author | Andrew J. Roger | Q16943765 |
| P2093 | author name string | Edward Susko | |
| Matthew Spencer | |||
| P2860 | cites work | Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 |
| The COG database: an updated version includes eukaryotes | Q21284294 | ||
| Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters. | Q52079499 | ||
| The frequency distribution of gene family sizes in complete genomes. | Q52243763 | ||
| SHOT: a web server for the construction of genome phylogenies | Q56918354 | ||
| Orthology, paralogy and proposed classification for paralog subtypes | Q57444232 | ||
| Estimating the pattern of nucleotide substitution | Q72138097 | ||
| Genome phylogenetic analysis based on extended gene contents | Q79926964 | ||
| Gene family content-based phylogeny of prokaryotes: the effect of criteria for inferring homology | Q80361470 | ||
| Lateral Gene Transfer and the Origins of Prokaryotic Groups | Q22065388 | ||
| Comparative genome analysis of Vibrio vulnificus, a marine pathogen | Q22065766 | ||
| Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 | Q22122385 | ||
| The ring of life provides evidence for a genome fusion origin of eukaryotes | Q22122495 | ||
| Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18 | Q24554266 | ||
| Comparative genomics of gene-family size in closely related bacteria | Q24791651 | ||
| Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes | Q24797719 | ||
| Birth and death of protein domains: a simple model of evolution explains power law behavior | Q24799758 | ||
| Measuring genome conservation across taxa: divided strains and united kingdoms | Q24801447 | ||
| Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models | Q24802795 | ||
| Evolutionary trees from DNA sequences: A maximum likelihood approach | Q27860898 | ||
| A genomic perspective on protein families | Q27860913 | ||
| Heterotachy, an important process of protein evolution | Q28212928 | ||
| The balance of driving forces during genome evolution in prokaryotes | Q28775893 | ||
| Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods | Q29547744 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| Retroids in archaea: phylogeny and lateral origins | Q30940021 | ||
| Estimating the tempo and mode of gene family evolution from comparative genomic data | Q30997971 | ||
| Genome trees and the tree of life | Q31103613 | ||
| Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve? | Q33193877 | ||
| Cladogenesis, coalescence and the evolution of the three domains of life | Q34308393 | ||
| Comparing genomes within the species Mycobacterium tuberculosis | Q35033207 | ||
| Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution | Q35146467 | ||
| Lateral gene transfer: when will adolescence end? | Q35583479 | ||
| Lengths of chromosomal segments conserved since divergence of man and mouse | Q36254112 | ||
| Computational inference of scenarios for alpha-proteobacterial genome evolution | Q36448684 | ||
| Evolutionary dynamics of full genome content in Escherichia coli | Q40388521 | ||
| Weighted genome trees: refinements and applications | Q40942773 | ||
| Phylogenetic trees based on gene content | Q43767229 | ||
| Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction | Q43809148 | ||
| MCMC genome rearrangement | Q47577694 | ||
| Patterns of bacterial gene movement | Q47678996 | ||
| A nonhyperthermophilic common ancestor to extant life forms | Q47732181 | ||
| Inferring the root of a phylogenetic tree | Q48309540 | ||
| Gene duplication and biased functional retention of paralogs in bacterial genomes | Q49140799 | ||
| Bayesian gene/species tree reconciliation and orthology analysis using MCMC. | Q50792806 | ||
| Maximum likelihood for genome phylogeny on gene content. | Q51942776 | ||
| P304 | page(s) | 157-178 | |
| P577 | publication date | 2007-02-05 | |
| P1433 | published in | Evolutionary Bioinformatics | Q5418673 |
| P1476 | title | Modelling prokaryote gene content | |
| P478 | volume | 2 |
| Q33654633 | Inference and characterization of horizontally transferred gene families using stochastic mapping |
| Q34120998 | Inferring bacterial genome flux while considering truncated genes |
| Q42082146 | Meta-analysis of general bacterial subclades in whole-genome phylogenies using tree topology profiling |
| Q34103827 | Phylogenetic stochastic mapping without matrix exponentiation |
| Q41400762 | Probabilistic models for CRISPR spacer content evolution |
| Q34552356 | Robustness of birth-death and gain models for inferring evolutionary events |
| Q30489524 | Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model |
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