Divergent Evolution of the Transcriptional Network Controlled by Snf1-Interacting Protein Sip4 in Budding Yeasts

scientific article published on 6 October 2015

Divergent Evolution of the Transcriptional Network Controlled by Snf1-Interacting Protein Sip4 in Budding Yeasts is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2015PLoSO..1039464M
P356DOI10.1371/JOURNAL.PONE.0139464
P932PMC publication ID4634231
P698PubMed publication ID26440109
P5875ResearchGate publication ID282645569

P2093author name stringConstance Mehlgarten
Ivo Grosse
Karin D Breunig
André Gohr
Anne-Kathrin Diesing
Ioana Lemnian
Jorrit-Jan Krijger
Lydia Kasper
P2860cites workAMP-Activated Protein Kinase in Metabolic Control and Insulin SignalingQ22241925
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologsQ24595539
Understanding the Warburg effect: the metabolic requirements of cell proliferationQ24604760
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye bindingQ25938984
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT MethodQ25938999
AMP-activated protein kinase: an energy sensor that regulates all aspects of cell functionQ26865723
WebLogo: A Sequence Logo GeneratorQ27860646
Dual influence of the yeast Cat1p (Snf1p) protein kinase on carbon source-dependent transcriptional activation of gluconeogenic genes by the regulatory gene CAT8.Q27930961
Glucose derepression of gluconeogenic enzymes in Saccharomyces cerevisiae correlates with phosphorylation of the gene activator Cat8pQ27933533
Transcriptional regulatory code of a eukaryotic genomeQ27933887
Evolution of a fungal regulatory gene family: the Zn(II)2Cys6 binuclear cluster DNA binding motifQ41589077
Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeastQ41591897
Differences in regulation of yeast gluconeogenesis revealed by Cat8p-independent activation of PCK1 and FBP1 genes in Kluyveromyces lactisQ42635077
Function of mammalian LKB1 and Ca2+/calmodulin-dependent protein kinase kinase alpha as Snf1-activating kinases in yeastQ46438638
Differential control of isocitrate lyase gene transcription by non-fermentable carbon sources in the milk yeast Kluyveromyces lactisQ46777396
AMPK: a cellular energy sensor primarily regulated by AMP.Q47098601
AMP-activated protein kinase: a cellular energy sensor with a key role in metabolic disorders and in cancer.Q48302574
Bias in the Cq value observed with hydrolysis probe based quantitative PCR can be corrected with the estimated PCR efficiency value.Q50565820
In-fusion assembly: seamless engineering of multidomain fusion proteins, modular vectors, and mutations.Q50899734
Regulation of primary carbon metabolism in Kluyveromyces lactisQ58379968
Glucose transport in the yeastKluyveromyces lactisQ60240028
Glucose transport in crabtree-positive and crabtree-negative yeastsQ69453440
A general method for polyethylene-glycol-induced genetic transformation of bacteria and yeastQ70314278
Dissecting regulatory networks by means of two-dimensional gel electrophoresis: application to the study of the diauxic shift in the yeast Saccharomyces cerevisiaeQ75405396
Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiaeQ27937036
Sip4, a Snf1 kinase-dependent transcriptional activator, binds to the carbon source-responsive element of gluconeogenic genesQ27937051
CAT8, a new zinc cluster-encoding gene necessary for derepression of gluconeogenic enzymes in the yeast Saccharomyces cerevisiaeQ27937168
Contribution of Cat8 and Sip4 to the transcriptional activation of yeast gluconeogenic genes by carbon source-responsive elementsQ27937561
The switch from fermentation to respiration in Saccharomyces cerevisiae is regulated by the Ert1 transcriptional activator/repressorQ27939202
A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistanceQ28131606
Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routinesQ28131620
The Crabtree Effect: A Regulatory System in YeastQ28258016
Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocinQ28362238
Saccharomyces Genome Database: the genomics resource of budding yeastQ29616757
Getting started with yeastQ29618025
Applications of high efficiency lithium acetate transformation of intact yeast cells using single-stranded nucleic acids as carrierQ29618081
Saccharomyces cerevisiae cell wall chitin, the Kluyveromyces lactis zymocin receptorQ30320922
An improved map of conserved regulatory sites for Saccharomyces cerevisiaeQ30477138
Combined global localization analysis and transcriptome data identify genes that are directly coregulated by Adr1 and Cat8.Q30983980
Inactivation of the Kluyveromyces lactis KlPDA1 gene leads to loss of pyruvate dehydrogenase activity, impairs growth on glucose and triggers aerobic alcoholic fermentationQ31936359
Mammalian TAK1 activates Snf1 protein kinase in yeast and phosphorylates AMP-activated protein kinase in vitroQ33249851
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencingQ33401685
Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR dataQ33411668
Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiaeQ33513760
An efficient transformation procedure enabling long-term storage of competent cells of various yeast generaQ34673780
A study on the fundamental mechanism and the evolutionary driving forces behind aerobic fermentation in yeastQ35009045
Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiaeQ35114839
A fungal family of transcriptional regulators: the zinc cluster proteinsQ36588772
Identification of upstream activator sequences that regulate induction of the beta-galactosidase gene in Kluyveromyces lactisQ36925274
Evolutionary principles of modular gene regulation in yeastsQ36942317
SNF1/AMPK pathways in yeastQ36992466
Construction of strains of Saccharomyces cerevisiae that grow on lactoseQ37537708
AMPK in Health and DiseaseQ37543855
Transcriptional regulation of nonfermentable carbon utilization in budding yeastQ37581046
AMP-activated protein kinase: nature's energy sensorQ37902500
AMPK: regulating energy balance at the cellular and whole body levels.Q38192428
Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8.Q38355889
DNA sequence preferences of GAL4 and PPR1: how a subset of Zn2 Cys6 binuclear cluster proteins recognizes DNA.Q38356138
Coregulation of the Kluyveromyces lactis lactose permease and beta-galactosidase genes is achieved by interaction of multiple LAC9 binding sites in a 2.6 kbp divergent promoterQ40507558
Gal80 proteins of Kluyveromyces lactis and Saccharomyces cerevisiae are highly conserved but contribute differently to glucose repression of the galactose regulonQ40657017
Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis.Q40815510
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectdivergent evolutionQ917925
protein evolutionQ59870539
P304page(s)e0139464
P577publication date2015-10-06
P1433published inPLOS OneQ564954
P1476titleDivergent Evolution of the Transcriptional Network Controlled by Snf1-Interacting Protein Sip4 in Budding Yeasts
P478volume10