| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/jcb/DancikACVP99 |
| P356 | DOI | 10.1089/106652799318300 |
| P698 | PubMed publication ID | 10582570 |
| P5875 | ResearchGate publication ID | 12717869 |
| P2093 | author name string | Addona TA | |
| Clauser KR | |||
| Dancík V | |||
| Pevzner PA | |||
| Vath JE | |||
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| P433 | issue | 3-4 | |
| P921 | main subject | mass spectrometry | Q180809 |
| P304 | page(s) | 327-342 | |
| P577 | publication date | 1999-09-01 | |
| P1433 | published in | Journal of Computational Biology | Q6295003 |
| P1476 | title | De novo peptide sequencing via tandem mass spectrometry | |
| P478 | volume | 6 |
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| Q37945792 | Algorithms for the de novo sequencing of peptides from tandem mass spectra |
| Q91984902 | Alphabet Projection of Spectra |
| Q34990005 | Alterations in energy metabolism, neuroprotection and visual signal transduction in the retina of Parkinsonian, MPTP-treated monkeys |
| Q38860768 | An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra |
| Q88780387 | An Automated, High-Throughput Method for Interpreting the Tandem Mass Spectra of Glycosaminoglycans |
| Q57009571 | An application of the metric access methods to the mass spectrometry data |
| Q51911857 | An iterative algorithm to quantify factors influencing peptide fragmentation during tandem mass spectrometry. |
| Q31172472 | Analysis of mass spectrometry data in proteomics. |
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| Q33862299 | Antilope--a Lagrangian relaxation approach to the de novo peptide sequencing problem. |
| Q31035849 | Application of de Novo Sequencing to Large-Scale Complex Proteomics Data Sets |
| Q28731684 | Applications of graph theory in protein structure identification |
| Q85926490 | Applying Arginylation for Bottom-Up Proteomics |
| Q34803622 | Automated interpretation of MS/MS spectra of oligosaccharides. |
| Q73933391 | Automated interpretation of low-energy collision-induced dissociation spectra by SeqMS, a software aid for de novo sequencing by tandem mass spectrometry |
| Q48273860 | Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy |
| Q28281533 | Automated protein identification by tandem mass spectrometry: issues and strategies |
| Q36004737 | Bacterial Electron Transfer Chains Primed by Proteomics |
| Q33528225 | Better score function for peptide identification with ETD MS/MS spectra |
| Q31029105 | Bioinformatic methods to exploit mass spectrometric data for proteomic applications |
| Q93186200 | Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis |
| Q36466517 | Bioinformatics and its applications in plant biology |
| Q37788630 | Bioinformatics for LC-MS/MS-Based Proteomics |
| Q38449865 | Bioinformatics support for high-throughput proteomics |
| Q38630666 | Bottom-Up Proteomics (2013-2015): Keeping up in the Era of Systems Biology |
| Q34013376 | Building and searching tandem mass spectral libraries for peptide identification |
| Q30982836 | CHASE, a charge-assisted sequencing algorithm for automated homology-based protein identifications with matrix-assisted laser desorption/ionization time-of-flight post-source decay fragmentation data |
| Q50113366 | Can Two-Dimensional IR-ECD Mass Spectrometry Improve Peptide de Novo Sequencing? |
| Q40398899 | Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra |
| Q33224736 | Charge state estimation for tandem mass spectrometry proteomics |
| Q45964923 | Charger: combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra. |
| Q40806003 | Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching |
| Q51643653 | Chi-square comparison of tryptic peptide-to-protein distributions of tandem mass spectrometry from blood with those of random expectation |
| Q31148959 | Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data. |
| Q51629238 | Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise. |
| Q38943925 | Comprehensive de Novo Peptide Sequencing from MS/MS Pairs Generated through Complementary Collision Induced Dissociation and 351 nm Ultraviolet Photodissociation. |
| Q38997181 | Computational Methods in Mass Spectrometry-Based Proteomics |
| Q47099388 | Constellation: a tool for rapid, automated phenotype assignment of a highly polymorphic pharmacogene, CYP2D6, from whole-genome sequences |
| Q41863066 | Constrained de novo sequencing of conotoxins. |
| Q46230468 | Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra |
| Q40107037 | Cross-species proteomics in analysis of mammalian sperm proteins. |
| Q35212347 | Current peptidomics: applications, purification, identification, quantification, and functional analysis |
| Q28265386 | CycloBranch: De Novo Sequencing of Nonribosomal Peptides from Accurate Product Ion Mass Spectra |
| Q33788673 | Data processing pipelines for comprehensive profiling of proteomics samples by label-free LC-MS for biomarker discovery |
| Q39251004 | De Novo MS/MS Sequencing of Native Human Antibodies |
| Q92176382 | De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments |
| Q40072595 | De Novo Sequencing Assisted Approach for Characterizing Mixture MS/MS Spectra |
| Q47617488 | De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods. |
| Q40493542 | De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra |
| Q39156137 | De Novo Sequencing of Top-Down Tandem Mass Spectra: A Next Step towards Retrieving a Complete Protein Sequence |
| Q51944566 | De novo analysis of peptide tandem mass spectra by spectral graph partitioning. |
| Q37313737 | De novo peptide identification via tandem mass spectrometry and integer linear optimization |
| Q42547537 | De novo peptide sequencing and identification with precision mass spectrometry |
| Q42163152 | De novo peptide sequencing based on a divide-and-conquer algorithm and peptide tandem spectrum simulation |
| Q38673213 | De novo peptide sequencing by deep learning |
| Q43868072 | De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation |
| Q33245171 | De novo peptide sequencing using exhaustive enumeration of peptide composition |
| Q91610269 | De novo prediction of the elemental composition of peptides and proteins based on a single mass |
| Q35751707 | De novo sequencing and homology searching |
| Q37655775 | De novo sequencing methods in proteomics |
| Q31099305 | De novo sequencing of peptides using MALDI/TOF-TOF. |
| Q100441828 | De novo sequencing of proteins by mass spectrometry |
| Q33550930 | De novo sequencing of tryptic peptides derived from Deinococcus radiodurans ribosomal proteins using 157 nm photodissociation MALDI TOF/TOF mass spectrometry |
| Q45758101 | De novo sequencing with limited number of post-translational modifications per peptide |
| Q47664753 | De novo sequencing, peptide composition analysis, and composition-based sequencing: a new strategy employing accurate mass determination by fourier transform ion cyclotron resonance mass spectrometry |
| Q24813129 | DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. |
| Q47295103 | Deep Omics |
| Q33820553 | DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data |
| Q90320313 | DeltaMass: Automated Detection and Visualization of Mass Shifts in Proteomic Open-Search Results |
| Q38615264 | Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks |
| Q57702125 | Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry |
| Q81624344 | Determination of partial amino acid composition from tandem mass spectra for use in peptide identification strategies |
| Q43668711 | Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation. |
| Q57998654 | Differentiating alpha- and beta-aspartic acids by electrospray ionization and low-energy tandem mass spectrometry |
| Q33607530 | DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring |
| Q91917160 | Discovery and Development of Novel Anti-fungal Peptides Against Food-spoiling Fungi |
| Q96112175 | Dissociative electron transfer of copper(ii) complexes of glycyl(glycyl/alanyl)tryptophan in vacuo: IRMPD action spectroscopy provides evidence of transition from zwitterionic to non-zwitterionic peptide structures |
| Q33229418 | Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides |
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| Q44601097 | High-confidence de novo peptide sequencing using positive charge derivatization and tandem MS spectra merging |
| Q36163361 | High-throughput strategies for the discovery and engineering of enzymes for biocatalysis |
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| Q39945716 | How much peptide sequence information is contained in ion trap tandem mass spectra? |
| Q33424129 | Identification and characterization of INMAP, a novel interphase nucleus and mitotic apparatus protein that is involved in spindle formation and cell cycle progression |
| Q40891823 | Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE-PCR |
| Q43661345 | Identification of a novel centrosomal protein CrpF46 involved in cell cycle progression and mitosis |
| Q42679171 | Identification of post-translational modifications via blind search of mass-spectra |
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| Q37097041 | Improved sequence tag generation method for peptide identification in tandem mass spectrometry |
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| Q51345651 | Increasing peptide identification in tandem mass spectrometry through automatic function switching optimization. |
| Q51932597 | Infrared multiphoton dissociation for enhanced de novo sequence interpretation of N-terminal sulfonated peptides in a quadrupole ion trap. |
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| Q33842564 | Large improvements in MS/MS-based peptide identification rates using a hybrid analysis |
| Q30998525 | Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation |
| Q36079215 | Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book |
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| Q34983181 | Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects |
| Q93200029 | Lys-Sequencer: An algorithm for de novo sequencing of peptides by paired single residue transposed Lys-C and Lys-N digestion coupled with high-resolution mass spectrometry |
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| Q38078861 | Mass spectrometry-based proteomics: basic principles and emerging technologies and directions |
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| Q59262735 | Metaheuristics based de novo protein sequencing: A new approach |
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| Q52008068 | Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation. |
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| Q30490288 | Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification |
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| Q37158631 | Multifactorial Understanding of Ion Abundance in Tandem Mass Spectrometry Experiments |
| Q24657366 | MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis |
| Q48901888 | NIPTL-Novo: Non-isobaric peptide termini labeling assisted peptide de novo sequencing |
| Q90064877 | NPS: scoring and evaluating the statistical significance of peptidic natural product-spectrum matches |
| Q34083429 | NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery |
| Q50732202 | Nature of functional estrogen receptors at the plasma membrane. |
| Q104681777 | New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics |
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| Q38419207 | OpenKnowledge for peer-to-peer experimentation in protein identification by MS/MS. |
| Q82219630 | Optimal construction of theoretical spectra for MS/MS spectra identification |
| Q33331980 | PARPST: a PARallel algorithm to find peptide sequence tags |
| Q28209613 | PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry |
| Q39283880 | PIPI: PTM-Invariant Peptide Identification Using Coding Method |
| Q45966021 | PRIMA: peptide robust identification from MS/MS spectra. |
| Q37070567 | PTMap--a sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites. |
| Q30278954 | Paired single residue-transposed Lys-N and Lys-C digestions for label-free identification of N-terminal and C-terminal MS/MS peptide product ions: ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry and tandem mass spect |
| Q45943300 | PepHMM: a hidden Markov model based scoring function for mass spectrometry database search. |
| Q34414526 | PepNovo: de novo peptide sequencing via probabilistic network modeling |
| Q51953488 | Peptide charge state determination for low-resolution tandem mass spectra. |
| Q42629118 | Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation |
| Q39665700 | Peptide de novo sequencing of mixture tandem mass spectra |
| Q33522689 | Peptide de novo sequencing using 157 nm photodissociation in a tandem time-of-flight mass spectrometer |
| Q80830941 | Peptide fragment intensity statistical modeling |
| Q51989997 | Peptide identification using peptide amino acid attribute vectors. |
| Q45999304 | Peptide sequence tags for fast database search in mass-spectrometry. |
| Q44069573 | Peptide-to-protein distribution versus a competition for significance to estimate error rate in blood protein identification |
| Q51929619 | Performance evaluation of existing de novo sequencing algorithms. |
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| Q36355635 | Precursor-ion mass re-estimation improves peptide identification on hybrid instruments |
| Q51931006 | Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra. |
| Q30745906 | ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data |
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| Q33995236 | ProbPS: a new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity |
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| Q50761009 | ProteinLasso: A Lasso regression approach to protein inference problem in shotgun proteomics. |
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| Q39393399 | Proteomic analysis of an unsequenced plant--Mangifera indica |
| Q31012093 | Proteomic analysis of the synaptic plasma membrane fraction isolated from rat forebrain. |
| Q35139099 | Proteomic challenges: sample preparation techniques for microgram-quantity protein analysis from biological samples |
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