Mammalian piRNAs: Biogenesis, function, and mysteries

scientific article published on 7 February 2014

Mammalian piRNAs: Biogenesis, function, and mysteries is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.4161/SPMG.27889
P932PMC publication ID4114582
P698PubMed publication ID25077039

P2093author name stringP Jeremy Wang
Qi Fu
P2860cites workChromatoid body and small RNAs in male germ cellsQ37886410
Small RNAs in Germline DevelopmentQ38071437
The epigenetic regulation of transposable elements by PIWI-interacting RNAs in <i>Drosophila</i>Q38107068
piRNA pathway and the potential processing site, the nuage, in the Drosophila germlineQ38112435
Diversifying microRNA sequence and functionQ38117040
Nucleic acid 3'-end recognition by the Argonaute2 PAZ domainQ38340880
The N domain of Argonaute drives duplex unwinding during RISC assemblyQ39414363
3' end formation of PIWI-interacting RNAs in vitroQ39472411
Associations between PIWI proteins and TDRD1/MTR-1 are critical for integrated subcellular localization in murine male germ cellsQ39802644
Transcriptional silencing and promoter methylation triggered by double-stranded RNAQ40370869
Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx moriQ42027872
Structural insights into mRNA recognition from a PIWI domain-siRNA guide complexQ42184881
Mili interacts with tudor domain-containing protein 1 in regulating spermatogenesisQ42254602
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytesQ42352247
Dnmt3L and the Establishment of Maternal Genomic ImprintsQ48874297
Turning catalytically inactive human Argonaute proteins into active slicer enzymesQ51001017
Cytochemical observations on the chromatoid body of the male germ cellsQ53741265
Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencingQ56765302
Gtsf1/Cue110, a gene encoding a protein with two copies of a CHHC Zn-finger motif, is involved in spermatogenesis and retrotransposon suppression in murine testesQ84524065
Initial sequencing and analysis of the human genomeQ21045365
Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in miceQ24293298
piRNA-Associated Germline Nuage Formation and Spermatogenesis Require MitoPLD Profusogenic Mitochondrial-Surface Lipid SignalingQ24296728
Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domainsQ24321999
The origin and behavior of mutable loci in maizeQ24519263
The developmental miRNA profiles of zebrafish as determined by small RNA cloningQ24529122
Isolation of a DEAD-family protein gene that encodes a murine homolog of Drosophila vasa and its specific expression in germ cell lineageQ24564486
MicroRNAs: target recognition and regulatory functionsQ24609584
Small silencing RNAs: an expanding universeQ24653997
Structure and conserved RNA binding of the PAZ domainQ27642535
Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated MiwiQ27658209
Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2Q27661958
Recognition of 2'-O-methylated 3'-end of piRNA by the PAZ domain of a Piwi proteinQ27666513
The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesisQ27674509
Structure and function of Zucchini endoribonuclease in piRNA biogenesisQ27682791
The small RNA profile during Drosophila melanogaster developmentQ28201894
A germline-specific class of small RNAs binds mammalian Piwi proteinsQ28244097
Structural basis for overhang-specific small interfering RNA recognition by the PAZ domainQ28262499
A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in DrosophilaQ28290099
Discrete small RNA-generating loci as master regulators of transposon activity in DrosophilaQ28292093
Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosisQ28504811
A novel class of small RNAs bind to MILI protein in mouse testesQ28505738
MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germlineQ28507423
Cytoplasmic compartmentalization of the fetal piRNA pathway in miceQ28507656
STK31(TDRD8) is dynamically regulated throughout mouse spermatogenesis and interacts with MIWI proteinQ28509323
Blockade of Pachytene piRNA Biogenesis Reveals a Novel Requirement for Maintaining Post-Meiotic Germline Genome IntegrityQ28509917
MITOPLD is a mitochondrial protein essential for nuage formation and piRNA biogenesis in the mouse germlineQ28510728
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in miceQ28511242
Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profileQ28511307
A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencingQ28511456
MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesisQ28511905
DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testesQ28513286
Two mouse piwi-related genes: miwi and miliQ28584745
MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAsQ28584864
Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3LQ28585211
The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germlineQ28585476
Mili, a mammalian member of piwi family gene, is essential for spermatogenesisQ28585613
Tdrd1/Mtr-1, a tudor-related gene, is essential for male germ-cell differentiation and nuage/germinal granule formation in miceQ28586082
Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathwayQ28586946
Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germlineQ28588151
GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germlineQ28589716
miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesisQ28589737
MILI, a PIWI-interacting RNA-binding protein, is required for germ line stem cell self-renewal and appears to positively regulate translationQ28590435
2'-O-methyl modification in mouse piRNAs and its methylaseQ28590599
MVH in piRNA processing and gene silencing of retrotransposonsQ28592934
Developmentally regulated piRNA clusters implicate MILI in transposon controlQ28593121
Tudor domain containing 12 (TDRD12) is essential for secondary PIWI interacting RNA biogenesis in miceQ28593136
A novel class of small RNAs in mouse spermatogenic cellsQ28593537
Tdrd6 is required for spermiogenesis, chromatoid body architecture, and regulation of miRNA expressionQ28593820
piRNA and spermatogenesis in miceQ28710062
Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencingQ28854369
GPAT2, a mitochondrial outer membrane protein, in piRNA biogenesis in germline stem cellsQ28854373
The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elementsQ28854381
Multiple epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesisQ28854389
Characterization of the piRNA Complex from Rat TestesQ29542681
Mobile elements: drivers of genome evolutionQ29547669
The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domainsQ29614228
PIWI-interacting small RNAs: the vanguard of genome defenceQ29614712
Argonaute proteins: key players in RNA silencingQ29614714
A distinct small RNA pathway silences selfish genetic elements in the germlineQ29614717
Crystal structure of Argonaute and its implications for RISC slicer activityQ29614980
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegansQ29616062
Small RNAs as guardians of the genomeQ29617221
piRNA-Triggered MIWI Ubiquitination and Removal by APC/C in Late SpermatogenesisQ32874774
Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testesQ33246418
Retrotransposon silencing by piRNAs: ping-pong players mark their sub-cellular boundariesQ33518480
A broadly conserved pathway generates 3'UTR-directed primary piRNAsQ33614944
Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germlineQ33953709
Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi proteinQ33986097
A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish.Q34003437
Small interfering RNA-induced transcriptional gene silencing in human cellsQ34161327
Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.Q34184707
Molecular dissection of human Argonaute proteins by DNA shuffling.Q34763313
Identification of piRNAs in the central nervous system.Q34985817
A 5'-uridine amplifies miRNA/miRNA* asymmetry in Drosophila by promoting RNA-induced silencing complex formation.Q35081081
Tudor domain containing 7 (Tdrd7) is essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis.Q35081652
piRNA profiling during specific stages of mouse spermatogenesisQ35111822
Widespread expression of piRNA-like molecules in somatic tissuesQ35174748
A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factorsQ35532755
Separation of stem cell maintenance and transposon silencing functions of Piwi proteinQ35558625
Pimet, the Drosophila homolog of HEN1, mediates 2'-O-methylation of Piwi- interacting RNAs at their 3' endsQ35855652
Small RNA in the nucleus: the RNA-chromatin ping-pongQ35935955
Drosophila PIWI associates with chromatin and interacts directly with HP1aQ35985875
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesisQ36149875
PIWI Expression and Function in CancerQ36320681
Epigenetic decisions in mammalian germ cells.Q36796591
Repetitive sequences in complex genomes: structure and evolutionQ36824098
An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testesQ36899631
PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegansQ36943578
Zili is required for germ cell differentiation and meiosis in zebrafishQ36947087
The Argonaute protein familyQ37096233
DmGTSF1 is necessary for Piwi-piRISC-mediated transcriptional transposon silencing in the Drosophila ovary.Q37098153
Drosophila Gtsf1 is an essential component of the Piwi-mediated transcriptional silencing complexQ37098163
Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline.Q37111392
Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family membersQ37287579
Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stabilityQ37352427
Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis.Q37395186
Epigenetics in spermatogenesisQ37501331
P304page(s)e27889
P577publication date2014-02-07
P1433published inSpermatogenesisQ26842428
P1476titleMammalian piRNAs: Biogenesis, function, and mysteries
P478volume4

Reverse relations

cites work (P2860)
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