| scholarly article | Q13442814 |
| P50 | author | Syma Khalid | Q43243869 |
| Mark S.P. Sansom | Q58330851 | ||
| Peter J Bond | Q59540068 | ||
| Timothy S Carpenter | Q59678629 | ||
| P2093 | author name string | Mark S P Sansom | |
| Syma Khalid | |||
| Peter J Bond | |||
| Timothy Carpenter | |||
| P2860 | cites work | Two models of the influenza A M2 channel domain: verification by comparison | Q77796127 |
| Differences in conductance of M2 proton channels of two influenza viruses at low and high pH | Q78793311 | ||
| Coarse-grained molecular dynamics simulations of membrane proteins and peptides | Q79372145 | ||
| A multiscale coarse-graining method for biomolecular systems | Q79935025 | ||
| Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel | Q80048287 | ||
| Multiscale coupling of mesoscopic- and atomistic-level lipid bilayer simulations | Q80409006 | ||
| Coarse-grained simulations of lipid bilayers | Q81234130 | ||
| The Protein Data Bank | Q24515306 | ||
| An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins | Q24537724 | ||
| Structure and mechanism of the M2 proton channel of influenza A virus | Q24625464 | ||
| Structure of the transmembrane region of the M2 protein H+ channel | Q27635441 | ||
| The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR | Q27639882 | ||
| Structural basis for the function and inhibition of an influenza virus proton channel | Q27649742 | ||
| Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase | Q27759156 | ||
| VMD: visual molecular dynamics | Q27860554 | ||
| Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features | Q27860675 | ||
| Comparative protein structure modeling of genes and genomes | Q27860712 | ||
| Comparative protein modelling by satisfaction of spatial restraints | Q27860866 | ||
| Mechanism for proton conduction of the M(2) ion channel of influenza A virus | Q28139014 | ||
| The gate of the influenza virus M2 proton channel is formed by a single tryptophan residue | Q28218385 | ||
| Chemical rescue of histidine selectivity filter mutants of the M2 ion channel of influenza A virus | Q28241293 | ||
| Influenza A virus M2 ion channel protein: a structure-function analysis | Q28285692 | ||
| From Levinthal to pathways to funnels | Q28300934 | ||
| All-Atom Structure Prediction and Folding Simulations of a Stable Protein | Q29305923 | ||
| The druggable genome | Q29547361 | ||
| Modeling of loops in protein structures | Q29615861 | ||
| The MARTINI force field: coarse grained model for biomolecular simulations | Q29617215 | ||
| HOLE: a program for the analysis of the pore dimensions of ion channel structural models | Q29619250 | ||
| Insertion and assembly of membrane proteins via simulation. | Q30159902 | ||
| Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer. | Q30332957 | ||
| Membrane protein folding: beyond the two stage model. | Q30336254 | ||
| The progress of membrane protein structure determination | Q30342003 | ||
| Membrane protein structure quality in molecular dynamics simulation. | Q30351245 | ||
| Transmembrane protein structures without X-rays. | Q30352513 | ||
| Multiscale simulation of transmembrane proteins. | Q30358359 | ||
| Coarse-grained MD simulations of membrane protein-bilayer self-assembly. | Q30368740 | ||
| A computational study of the closed and open states of the influenza a M2 proton channel | Q30995959 | ||
| Folding Simulations of the Transmembrane Helix of Virus Protein U in an Implicit Membrane Model | Q31030221 | ||
| The M2 channel of influenza A virus: a molecular dynamics study | Q32019823 | ||
| Viral ion channels: molecular modeling and simulation | Q33536851 | ||
| Definitive assignment of proton selectivity and attoampere unitary current to the M2 ion channel protein of influenza A virus | Q33851167 | ||
| Transmembrane four-helix bundle of influenza A M2 protein channel: structural implications from helix tilt and orientation | Q33907773 | ||
| The molecular basis of the specific anti-influenza action of amantadine | Q33931939 | ||
| Sequence determinants of the energetics of folding of a transmembrane four-helix-bundle protein. | Q34064987 | ||
| Transmembrane domain of M2 protein from influenza A virus studied by solid-state (15)N polarization inversion spin exchange at magic angle NMR | Q34173628 | ||
| Molecular dynamics simulation of proton transport through the influenza A virus M2 channel | Q34178866 | ||
| Proton conductance of influenza virus M2 protein in planar lipid bilayers | Q34187038 | ||
| The protein folding 'speed limit'. | Q34315486 | ||
| Use of thiol-disulfide equilibria to measure the energetics of assembly of transmembrane helices in phospholipid bilayers | Q34385274 | ||
| How well can simulation predict protein folding kinetics and thermodynamics? | Q34415717 | ||
| Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity. | Q34598265 | ||
| Membrane assembly of simple helix homo-oligomers studied via molecular dynamics simulations | Q35606823 | ||
| Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations. | Q35635569 | ||
| The machinery of membrane protein assembly | Q35863877 | ||
| Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs | Q35863914 | ||
| Computer simulations of membrane proteins | Q35935402 | ||
| Proton transport behavior through the influenza A M2 channel: insights from molecular simulation | Q36129061 | ||
| Molecular dynamics simulations of proteins in lipid bilayers | Q36206945 | ||
| Solving the membrane protein folding problem | Q36327794 | ||
| A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity | Q36592280 | ||
| Initial structural and dynamic characterization of the M2 protein transmembrane and amphipathic helices in lipid bilayers | Q36631397 | ||
| Coarse grained protein-lipid model with application to lipoprotein particles | Q36874437 | ||
| Coarse-grained simulation: a high-throughput computational approach to membrane proteins | Q37061474 | ||
| A secondary gate as a mechanism for inhibition of the M2 proton channel by amantadine. | Q37241136 | ||
| Helix-helix interactions in membrane proteins: coarse-grained simulations of glycophorin a helix dimerization. | Q40048776 | ||
| Defining the transmembrane helix of M2 protein from influenza A by molecular dynamics simulations in a lipid bilayer | Q40140422 | ||
| Exploring models of the influenza A M2 channel: MD simulations in a phospholipid bilayer | Q40155833 | ||
| Direct simulation of transmembrane helix association: role of asparagines | Q40295841 | ||
| The druggable genome: an update | Q40362716 | ||
| Recognition of transmembrane helices by the endoplasmic reticulum translocon. | Q40464906 | ||
| Influence of residue 44 on the activity of the M2 proton channel of influenza A virus. | Q40479778 | ||
| Permeation and activation of the M2 ion channel of influenza A virus. | Q40866037 | ||
| Mechanosensitive membrane channels in action | Q41815235 | ||
| The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment | Q42083512 | ||
| Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques. | Q42155185 | ||
| Two possible conducting states of the influenza A virus M2 ion channel | Q42626498 | ||
| Protonation of histidine and histidine-tryptophan interaction in the activation of the M2 ion channel from influenza a virus | Q42649380 | ||
| Self-assembling of peptide/membrane complexes by atomistic molecular dynamics simulations | Q42989362 | ||
| Molecular dynamics simulations of model trans-membrane peptides in lipid bilayers: a systematic investigation of hydrophobic mismatch | Q43242319 | ||
| Influenza virus M2 protein is an integral membrane protein expressed on the infected-cell surface | Q43551346 | ||
| Expression and initial structural insights from solid-state NMR of the M2 proton channel from influenza A virus | Q44130593 | ||
| Proline-induced distortions of transmembrane helices. | Q44205414 | ||
| Ab initio folding simulation of the Trp-cage mini-protein approaches NMR resolution | Q44360114 | ||
| Studies of structural changes in the M2 proton channel of influenza A virus by tryptophan fluorescence | Q44701177 | ||
| Experimentally based orientational refinement of membrane protein models: A structure for the Influenza A M2 H+ channel | Q44931486 | ||
| Computer modeling of polyleucine-based coiled coil dimers in a realistic membrane environment: insight into helix-helix interactions in membrane proteins | Q44974388 | ||
| Coarse-grained model for phospholipid/cholesterol bilayer | Q45139908 | ||
| Sequence determinants of a transmembrane proton channel: an inverse relationship between stability and function | Q45284466 | ||
| Helix tilt of the M2 transmembrane peptide from influenza A virus: an intrinsic property | Q45745250 | ||
| How pH opens a H+ channel: the gating mechanism of influenza A M2. | Q46843291 | ||
| The MARTINI Coarse-Grained Force Field: Extension to Proteins. | Q47741405 | ||
| Transmembrane helix prediction: a comparative evaluation and analysis. | Q51972287 | ||
| Influence of amantadine resistance mutations on the pH regulatory function of the M2 protein of influenza A viruses | Q54256724 | ||
| The final stages of folding of the membrane protein bacteriorhodopsin occur by kinetically indistinguishable parallel folding paths that are mediated by pH 1 1Edited by A. R. Fersht | Q57905244 | ||
| G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers | Q59176772 | ||
| Intermediates in the folding of the membrane protein bacteriorhodopsin | Q59488899 | ||
| Coarse-Grained Model of Proteins Incorporating Atomistic Detail of the Active Site | Q64032837 | ||
| Membrane protein folding and oligomerization: the two-stage model | Q67662788 | ||
| An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies | Q71877338 | ||
| Asparagine-mediated self-association of a model transmembrane helix | Q73402361 | ||
| P433 | issue | 8 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | self-assembly | Q910150 |
| P304 | page(s) | 3790-3801 | |
| P577 | publication date | 2008-07-11 | |
| P1433 | published in | Biophysical Journal | Q2032955 |
| P1476 | title | Self-assembly of a simple membrane protein: coarse-grained molecular dynamics simulations of the influenza M2 channel | |
| P478 | volume | 95 |
| Q28485272 | Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations |
| Q37773796 | Coarse grained molecular dynamics simulations of transmembrane protein-lipid systems. |
| Q40575932 | Conformational Response of Influenza A M2 Transmembrane Domain to Amantadine Drug Binding at Low pH (pH 5.5). |
| Q37876360 | Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides. |
| Q33933329 | Folding and assembly of TMD 6-related segments of DMT 1 in trifluoroethanol aqueous solution |
| Q57129265 | Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites |
| Q37282382 | Identification of the functional core of the influenza A virus A/M2 proton-selective ion channel |
| Q38639224 | Interaction between the NS4B amphipathic helix, AH2, and charged lipid headgroups alters membrane morphology and AH2 oligomeric state--Implications for the Hepatitis C virus life cycle. |
| Q46006059 | Lipid molecules can induce an opening of membrane-facing tunnels in cytochrome P450 1A2. |
| Q34054370 | Mapping the druggable allosteric space of G-protein coupled receptors: a fragment-based molecular dynamics approach |
| Q37263813 | Membrane perturbation action mode and structure-activity relationships of Protonectin, a novel antimicrobial peptide from the venom of the neotropical social wasp Agelaia pallipes pallipes |
| Q57235419 | Mixing coarse-grained and fine-grained water in molecular dynamics simulations of a single system |
| Q30443341 | Modeling and simulation of ion channels |
| Q48311618 | Molecular simulations of self-assembly processes in metal-organic frameworks: Model dependence. |
| Q38082490 | Multi-resolution simulation of biomolecular systems: a review of methodological issues |
| Q38017092 | On developing coarse-grained models for biomolecular simulation: a review |
| Q57975273 | On the application of the MARTINI coarse-grained model to immersion of a protein in a phospholipid bilayer |
| Q40896861 | Patch formation of a viral channel forming protein within a lipid membrane--Vpu of HIV-1. |
| Q38109488 | Perspective on the Martini model. |
| Q30370486 | Prediction of the structures of helical membrane proteins based on a minimum unfavorable contacts approach. |
| Q40768068 | Probing the oligomeric state and interaction surfaces of Fukutin-I in dilauroylphosphatidylcholine bilayers. |
| Q54712307 | Simulations of the c-subunit of ATP-synthase reveal helix rearrangements. |
| Q41296831 | Stability and membrane orientation of the fukutin transmembrane domain: a combined multiscale molecular dynamics and circular dichroism study |
| Q37091337 | Structure and Mechanism of the Influenza A M218-60 Dimer of Dimers |
| Q36410326 | Systematic multiscale simulation of membrane protein systems |
| Q37293306 | The 3-dimensional structure of a hepatitis C virus p7 ion channel by electron microscopy |
| Q40896594 | The interaction of phospholipase A2 with a phospholipid bilayer: coarse-grained molecular dynamics simulations. |
Search more.