Ultra-deep sequencing reveals hidden HIV-1 minority lineages and shifts of viral population between the main cellular reservoirs of the infection after therapy interruption

scientific article published in June 2012

Ultra-deep sequencing reveals hidden HIV-1 minority lineages and shifts of viral population between the main cellular reservoirs of the infection after therapy interruption is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/JMV.23292
P698PubMed publication ID22996031

P50authorGiuseppe IppolitoQ28468788
Massimo CiccozziQ28743803
Alessandra Lo PrestiQ37366782
Alessandro BrusellesQ47502235
Emanuela GiombiniQ58664627
Isabella AbbateQ104765384
P2093author name stringMaria R Capobianchi
Gianpiero D'Offizi
Pasquale Narciso
Gabriella Rozera
Barbara Bartolini
Chrysoula Vlassi
P2860cites workDynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencingQ28474783
Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS.Q30011039
Reappearance of an 11-year-old sequence in an HIV-1 infected patient during treatment interruptionQ33302143
Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistanceQ35914785
HIV rebounds from latently infected cells, rather than from continuing low-level replicationQ36954950
Emergence and persistence of CXCR4-tropic HIV-1 in a population of men from the multicenter AIDS cohort studyQ37365672
Purifying selection of CCR5-tropic human immunodeficiency virus type 1 variants in AIDS subjects that have developed syncytium-inducing, CXCR4-tropic viruses.Q39002835
Differences in molecular evolution between switch (R5 to R5X4/X4-tropic) and non-switch (R5-tropic only) HIV-1 populations during infection.Q39250852
Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progressionQ39534825
Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequencesQ40344458
Analysis of co-receptor usage of circulating viral and proviral HIV genome quasispecies by ultra-deep pyrosequencing in patients who are candidates for CCR5 antagonist treatment.Q51667740
Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infectionQ56334735
P433issue6
P304page(s)839-844
P577publication date2012-06-01
P1433published inJournal of Medical VirologyQ15716684
P1476titleUltra-deep sequencing reveals hidden HIV-1 minority lineages and shifts of viral population between the main cellular reservoirs of the infection after therapy interruption
P478volume84

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cites work (P2860)
Q36228844A deep sequencing reveals significant diversity among dominant variants and evolutionary dynamics of avian leukosis viruses in two infectious ecosystems
Q28547668Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints
Q37045263Analysis of Quasispecies of Avain Leukosis Virus Subgroup J Using Sanger and High-throughput Sequencing
Q38079656Challenges in virological diagnosis of HIV -1 transmission from sexual abuse--HIV-1 genetic links are mandatory
Q42206476Evolution of HIV-1 tropism at quasispecies level after 5 years of combination antiretroviral therapy in patients always suppressed or experiencing episodes of virological failure
Q34846620Inhibition of dual/mixed tropic HIV-1 isolates by CCR5-inhibitors in primary lymphocytes and macrophages.
Q59794764Maintenance and reappearance of extremely divergent intra-host HIV-1 variants
Q36676496Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing
Q37495405Transmitted HIV drug resistance in treatment-naive Romanian patients
Q52567903Ultradeep single-molecule real-time sequencing of HIV envelope reveals complete compartmentalization of highly macrophage-tropic R5 proviral variants in brain and CXCR4-using variants in immune and peripheral tissues.
Q40394214Viroid quasispecies revealed by deep sequencing