Importance of sequence and structural elements within a viral replication repressor

scientific article

Importance of sequence and structural elements within a viral replication repressor is …
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scholarly articleQ13442814

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P356DOI10.1016/J.VIROL.2004.12.015
P698PubMed publication ID15721364
P5875ResearchGate publication ID8012776

P50authorAnne SimonQ4768799
P2093author name stringJiuchun Zhang
P2860cites workCis-acting RNA elements at the 5' end of Sindbis virus genome RNA regulate minus- and plus-strand RNA synthesisQ24540064
An internally located RNA hairpin enhances replication of Tomato bushy stunt virus RNAsQ24540527
5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesisQ24545690
Biased hypermutagenesis associated with mutations in an untranslated hairpin of an RNA virusQ24564078
Repression and derepression of minus-strand synthesis in a plus-strand RNA virus repliconQ24564086
A replication silencer element in a plus-strand RNA virusQ24680078
Role of the 3'-untranslated regions of alfalfa mosaic virus RNAs in the formation of a transiently expressed replicase in plants and in the assembly of virionsQ27469832
Essential role of cyclization sequences in flavivirus RNA replicationQ27469848
Members of the NF90/NFAR protein group are involved in the life cycle of a positive-strand RNA virusQ27489818
RNA motifs that determine specificity between a viral replicase and its promoterQ27622488
3'-Terminal RNA secondary structures are important for accumulation of tomato bushy stunt virus DI RNAsQ28204848
Cis-acting regulatory elements in the potato virus X 3' non-translated region differentially affect minus-strand and plus-strand RNA accumulationQ28208662
De novo initiation of viral RNA-dependent RNA synthesisQ28214923
Turnip crinkle virus coat protein mediates suppression of RNA silencing in Nicotiana benthamiana.Q30332578
Structural motifs in RNA.Q33907399
FUNCTIONS OF THE 3'-UNTRANSLATED REGIONS OF POSITIVE STRAND RNA VIRAL GENOMES.Q33955934
Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA.Q34272669
Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interactionQ34419402
The coat protein of turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation stepQ34462483
Fitness of a turnip crinkle virus satellite RNA correlates with a sequence-nonspecific hairpin and flanking sequences that enhance replication and repress the accumulation of virionsQ35105066
Cell-dependent role for the poliovirus 3' noncoding region in positive-strand RNA synthesisQ35542907
Replication of poliovirus RNA with complete internal ribosome entry site deletionsQ35542921
RNA-dependent RNA polymerase from plants infected with turnip crinkle virus can transcribe (+)- and (-)-strands of virus-associated RNAsQ35747489
Initiation of viral RNA-dependent RNA polymerizationQ35754600
Short internal sequences involved in replication and virion accumulation in a subviral RNA of turnip crinkle virusQ37747336
The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesisQ39698369
In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5'- and 3'-terminal regions that influence RNA structureQ40605432
Replication of the RNA segments of a bipartite viral genome is coordinated by a transactivating subgenomic RNA.Q40728886
Poliovirus RNA replication requires genome circularization through a protein-protein bridgeQ40791248
RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virusQ41991405
A long-range interaction in Qbeta RNA that bridges the thousand nucleotides between the M-site and the 3' end is required for replicationQ43206279
Mutational analysis of cis-acting sequences in the 3'- and 5'-untranslated regions of RNA2 of red clover necrotic mosaic virusQ43453848
Requirement of a 5'-proximal linear sequence on minus strands for plus-strand synthesis of a satellite RNA associated with turnip crinkle virusQ43649534
RNA-mediated trans-activation of transcription from a viral RNA.Q44869950
Significance of the 3'-terminal region in minus-strand RNA synthesis of Hibiscus chlorotic ringspot virusQ45633938
Enhanced viral pathogenesis associated with a virulent mutant virus or a virulent satellite RNA correlates with reduced virion accumulation and abundance of free coat proteinQ45722396
A multifunctional turnip crinkle virus replication enhancer revealed by in vivo functional SELEX.Q45729410
Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymeraseQ45732127
In vivo and in vitro characterization of an RNA replication enhancer in a satellite RNA associated with turnip crinkle virusQ45735284
A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complexQ45751191
Satellite RNA-mediated resistance to turnip crinkle virus in Arabidopsis involves a reduction in virus movementQ45758999
RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesisQ56901988
Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymeraseQ71514715
Enhancer-like properties of an RNA element that modulates Tombusvirus RNA accumulationQ74625037
Analysis of a viral replication repressor: sequence requirements for a large symmetrical internal loopQ80357139
P433issue2
P407language of work or nameEnglishQ1860
P304page(s)301-315
P577publication date2005-03-01
P1433published inVirologyQ7934867
P1476titleImportance of sequence and structural elements within a viral replication repressor
P478volume333

Reverse relations

cites work (P2860)
Q383478973'UTRs of carmoviruses
Q24612511A cis-replication element functions in both orientations to enhance replication of Turnip crinkle virus
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Q34366788Conformational changes involved in initiation of minus-strand synthesis of a virus-associated RNA.
Q33290214Efficient replication, and evolution of Sindbis virus genomes with non-canonical 3'A/U-rich elements (NC3ARE) in neonatal mice
Q38527965Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus.
Q34065793Evolution of virus-derived sequences for high-level replication of a subviral RNA
Q37755873HIV-1 evolution: frustrating therapies, but disclosing molecular mechanisms
Q43157191Insights into the selective pressures restricting Pelargonium flower break virus genome variability: Evidence for host adaptation.
Q35608747Long-distance RNA-RNA interactions between terminal elements and the same subset of internal elements on the potato virus X genome mediate minus- and plus-strand RNA synthesis
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Q41738408Rapid evolution of in vivo-selected sequences and structures replacing 20% of a subviral RNA.
Q59359892SELEX and SHAPE reveal that sequence motifs and an extended hairpin in the 5' portion of Turnip crinkle virus satellite RNA C mediate fitness in plants
Q36845765Structural domains within the 3' untranslated region of Turnip crinkle virus.
Q37033391Structural plasticity and rapid evolution in a viral RNA revealed by in vivo genetic selection.
Q81505302Structure and prevalence of replication silencer-3' terminus RNA interactions in Tombusviridae
Q41350827Structures required for poly(A) tail-independent translation overlap with, but are distinct from, cap-independent translation and RNA replication signals at the 3' end of Tobacco necrosis virus RNA
Q24644485The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits
Q34261428The 3' untranslated region of Pea Enation Mosaic Virus contains two T-shaped, ribosome-binding, cap-independent translation enhancers
Q33650386The 3'-terminal 55 nucleotides of bovine coronavirus defective interfering RNA harbor cis-acting elements required for both negative- and positive-strand RNA synthesis
Q42610759cis preferential replication of Lettuce infectious yellows virus (LIYV) RNA 1: the initial step in the asynchronous replication of the LIYV genomic RNAs

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