Pseudogenes and DNA-based diet analyses: a cautionary tale from a relatively well sampled predator-prey system.

scientific article published on 28 April 2008

Pseudogenes and DNA-based diet analyses: a cautionary tale from a relatively well sampled predator-prey system. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1017/S0007485308005993
P698PubMed publication ID18439341
P5875ResearchGate publication ID5414290

P50authorMark HindellQ52646087
Glenn DunsheaQ56963696
P2093author name stringR S Wells
S N Jarman
N B Barros
N J Gales
P2860cites workMUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogeneticsQ24801566
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignmentQ27860726
Pattern of organization of human mitochondrial pseudogenes in the nuclear genomeQ28768380
Mitochondrial pseudogenes: evolution's misplaced witnessesQ29616343
Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apesQ30887367
Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples.Q33201408
A genomic perspective on the shortcomings of mitochondrial DNA for "barcoding" identificationQ33265026
Multiple nuclear pseudogenes of mitochondrial cytochrome b in Ctenomys (Caviomorpha, rodentia) with either great similarity to or high divergence from the true mitochondrial sequence.Q33940368
Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitatQ34052431
NUMTs in sequenced eukaryotic genomes.Q34304830
Molecular identification of prey in predator dietsQ34612290
Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleusQ37089800
Mitochondrial DNA: molecular fossils in the nucleus.Q41010405
Quantification of damage in DNA recovered from highly degraded samples--a case study on DNA in faeces.Q42036317
Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoidsQ47191254
Using secondary structure to identify ribosomal numts: cautionary examples from the human genomeQ47593725
Universal primers and PCR of gut contents to study marine invertebrate dietsQ48149546
Evaluating putative chimeric sequences from PCR-amplified products.Q48525767
Rapid screening of invertebrate predators for multiple prey DNA targetsQ48953803
Detecting predation and scavenging by DNA gut-content analysis: a case study using a soil insect predator-prey system.Q52652969
A minimalist barcode can identify a specimen whose DNA is degradedQ56983607
Combining DNA and morphological analyses of faecal samples improves insight into trophic interactions: a case study using a generalist predatorQ57268970
P433issue3
P921main subjectpredationQ170430
predator–prey systemQ2178572
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)239-248
P577publication date2008-04-28
P1433published inBulletin of Entomological ResearchQ15763806
P1476titlePseudogenes and DNA-based diet analyses: a cautionary tale from a relatively well sampled predator-prey system
P478volume98

Reverse relations

cites work (P2860)
Q44538792A cryptic, intergeneric cytochrome c oxidase I pseudogene in tyrant flycatchers (family: Tyrannidae).
Q33434383DNA-based diet analysis for any predator
Q95840275Estimation of trophic niches in myrmecophagous spider predators
Q34406021Frequency matrix approach demonstrates high sequence quality in avian BARCODEs and highlights cryptic pseudogenes
Q28703894Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing
Q34092775PCR enrichment techniques to identify the diet of predators.
Q28729126Sliding window analyses for optimal selection of mini-barcodes, and application to 454-pyrosequencing for specimen identification from degraded DNA
Q36818429Stranded dolphin stomach contents represent the free-ranging population's diet
Q83204761The occurrence of mtDNA heteroplasmy in multiple cetacean species

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