Syntrophobacteraceae-affiliated species are major propionate-degrading sulfate reducers in paddy soil

scientific article

Syntrophobacteraceae-affiliated species are major propionate-degrading sulfate reducers in paddy soil is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1111/1462-2920.13698
P698PubMed publication ID28198083

P50authorRalf ConradQ60983556
P2093author name stringPengfei Liu
P2860cites workphyloseq: an R package for reproducible interactive analysis and graphics of microbiome census dataQ24288698
Modularity and community structure in networksQ24548534
Syntrophy in anaerobic global carbon cyclesQ24644873
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARBQ24685829
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Sulfate-reducing microorganisms in wetlands - fameless actors in carbon cycling and climate changeQ28731672
Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihoodQ28740970
Fast unfolding of communities in large networksQ29305711
ARB: a software environment for sequence dataQ29547354
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomyQ29547619
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platformsQ29614454
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainageQ30205010
Characterization of the anaerobic propionate-degrading syntrophs Smithella propionica gen. nov., sp. nov. and Syntrophobacter woliniiQ30577003
Desulfovirga adipica gen. nov., sp. nov., an adipate-degrading, gram-negative, sulfate-reducing bacteriumQ30589818
Optimizing rice yields while minimizing yield-scaled global warming potentialQ30675855
Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR.Q30826550
Cryptanaerobacter phenolicus gen. nov., sp. nov., an anaerobe that transforms phenol into benzoate via 4-hydroxybenzoateQ30980580
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communitiesQ33131291
Molecular characterization of bacterial communities mineralizing benzene under sulfate-reducing conditionsQ33352791
Identification of rice root associated nitrate, sulfate and ferric iron reducing bacteria during root decompositionQ33497557
Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlandsQ33775284
Demonstrating microbial co-occurrence pattern analyses within and between ecosystemsQ33917852
Pathway of propionate oxidation by a syntrophic culture of Smithella propionica and Methanospirillum hungatei.Q33940981
Using network analysis to explore co-occurrence patterns in soil microbial communitiesQ34013535
Syntrophomonadaceae-affiliated species as active butyrate-utilizing syntrophs in paddy field soil.Q34175351
Syntrophs dominate sequences associated with the mercury methylation-related gene hgcA in the water conservation areas of the Florida EvergladesQ34261154
Molecular ecological network analyses.Q34286409
Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plantQ35092534
Different bacterial populations associated with the roots and rhizosphere of rice incorporate plant-derived carbonQ35134092
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductasesQ35154357
Syntrophic growth of Desulfovibrio alaskensis requires genes for H2 and formate metabolism as well as those for flagellum and biofilm formationQ35548327
Quantitative detection of syntrophic fatty acid-degrading bacterial communities in methanogenic environments.Q35588101
A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genesQ35734328
Distribution, activities, and interactions of methanogens and sulfate-reducing prokaryotes in the Florida EvergladesQ35746856
Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing BenzeneQ35914707
Gypsum amendment to rice paddy soil stimulated bacteria involved in sulfur cycling but largely preserved the phylogenetic composition of the total bacterial community.Q35991656
The core populations and co-occurrence patterns of prokaryotic communities in household biogas digestersQ36091973
Syntrophic oxidation of propionate in rice field soil at 15 and 30°C under methanogenic conditionsQ36155722
Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics toolQ37194307
Metabolic flexibility of sulfate-reducing bacteriaQ37898529
The global methane cycle: recent advances in understanding the microbial processes involvedQ38114386
Climate-smart soilsQ38881192
Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soilQ40171135
Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice fieldQ42020828
Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditionsQ42574504
Dominance of sulfur-fueled iron oxide reduction in low-sulfate freshwater sedimentsQ42593882
Diversity, activity, and abundance of sulfate-reducing bacteria in saline and hypersaline soda lakesQ42845728
Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probingQ43258924
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communitiesQ43791398
Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment cultureQ46427177
Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics.Q46629740
Functional marker genes for identification of sulfate-reducing prokaryotesQ46783817
Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants.Q46960653
Sulfur oxidation in rice field soil: activity, enumeration, isolation and characterization of thiosulfate-oxidizing bacteriaQ47991561
Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basaltQ48040407
Graph drawing by force-directed placementQ55954181
Dynamics of sulfate reduction and sulfate-reducing prokaryotes in anaerobic paddy soil amended with rice strawQ57236223
Fertilizer management practices and greenhouse gas emissions from rice systems: A quantitative review and analysisQ57934763
P433issue4
P921main subjectSyntrophobacteraceaeQ19681611
P304page(s)1669-1686
P577publication date2017-02-15
P1433published inEnvironmental MicrobiologyQ15752447
P1476titleSyntrophobacteraceae-affiliated species are major propionate-degrading sulfate reducers in paddy soil
P478volume19

Reverse relations

cites work (P2860)
Q92302253COD/sulfate ratio does not affect the methane yield and microbial diversity in anaerobic digesters
Q89766433Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters
Q56669603Denitrifying sulfur conversion-associated EBPR: Effects of temperature and carbon source on anaerobic metabolism and performance
Q46257303Identification of Syntrophobacteraceae as major acetate-degrading sulfate reducing bacteria in Italian paddy soil.
Q64252183Impacts of Human Activities on the Composition and Abundance of Sulfate-Reducing and Sulfur-Oxidizing Microorganisms in Polluted River Sediments
Q57154916Metatranscriptomics reveals a differential temperature effect on the structural and functional organization of the anaerobic food web in rice field soil
Q46238621Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium".
Q90412181Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil
Q51732411Syntrophic pathways for microbial mercury methylation.

Search more.