The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

scientific article published on 9 June 2014

The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/JXB/ERU233
P698PubMed publication ID24913630
P5875ResearchGate publication ID263058657

P50authorGeorge CouplandQ5538151
Yves Van de PeerQ28468994
Lucia ColomboQ51919452
Marta A MendesQ56953769
Alice PajoroQ57179797
Aalt D J van DijkQ79803543
Aimone PorriQ125296231
P2093author name stringBrendan Davies
Gerco C Angenent
Sandra Biewers
Evangelia Dougali
Felipe Leal Valentim
P2860cites workGibberellins promote flowering of arabidopsis by activating the LEAFY promoterQ24543987
The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradationQ24561911
Control of Arabidopsis flower and seed development by the homeotic gene APETALA2Q24675221
Integration of floral inductive signals in ArabidopsisQ28143164
B and C floral organ identity functions require SEPALLATA MADS-box genesQ28144934
Molecular basis of seasonal time measurement in ArabidopsisQ28202660
miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thalianaQ28256186
The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factorsQ28257519
Gibberellin regulates the Arabidopsis floral transition through miR156-targeted SQUAMOSA promoter binding-like transcription factorsQ28274072
The BioGRID interaction database: 2013 updateQ28280503
The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identityQ28291983
FT protein movement contributes to long-distance signaling in floral induction of ArabidopsisQ28298624
Export of FT protein from phloem companion cells is sufficient for floral induction in ArabidopsisQ28304549
An oestrogen-receptor-α-bound human chromatin interactomeQ29541719
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genesQ29617907
Forecasting flowering phenology under climate warming by modelling the regulatory dynamics of flowering-time genesQ30661260
Continuous-time modeling of cell fate determination in Arabidopsis flowersQ30986246
Genome-wide analysis of gene expression during early Arabidopsis flower developmentQ33247459
Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majusQ33334017
A pair of related genes with antagonistic roles in mediating flowering signals.Q33334148
Activation tagging of the floral inducer FT.Q33334152
Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA.Q45932115
Assessing the redundancy of MADS-box genes during carpel and ovule developmentQ46420736
The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamensQ46435786
The Ovule and the Embryo Sac.Q46590573
The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in ArabidopsisQ46985621
Characterization of SOC1's central role in flowering by the identification of its upstream and downstream regulators.Q47389371
The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of floweringQ47872541
Molecular characterisation of the Arabidopsis SBP-box genesQ47919500
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS worldQ48238102
Temperature-dependent regulation of flowering by antagonistic FLM variants.Q50719657
The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thalianaQ51551911
A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryosQ51600757
The SOC1‐SPL module integrates photoperiod and gibberellic acid signals to control flowering time in ArabidopsisQ51851176
Mobile gibberellin directly stimulates Arabidopsis hypocotyl xylem expansion.Q51870315
A repressor complex governs the integration of flowering signals in ArabidopsisQ51952963
CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence developmentQ51980134
FT protein acts as a long-range signal in ArabidopsisQ51984417
Comprehensive interaction map of the Arabidopsis MADS Box transcription factorsQ52053497
A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profilesQ52086693
Terminal flower2, an Arabidopsis homolog of heterochromatin protein1, counteracts the activation of flowering locus T by constans in the vascular tissues of leaves to regulate flowering timeQ52097448
Complexes of MADS-box proteins are sufficient to convert leaves into floral organsQ56836177
Prediction of photoperiodic regulators from quantitative gene circuit models.Q59303565
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesQ42210576
The sequential action of miR156 and miR172 regulates developmental timing in ArabidopsisQ42536034
Comprehensive hormone profiling in developing Arabidopsis seeds: examination of the site of ABA biosynthesis, ABA transport and hormone interactionsQ42854091
Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2.Q42950257
Mathematical modeling of an oscillating gene circuit to unravel the circadian clock network of Arabidopsis thalianaQ42978379
cis-Regulatory elements and chromatin state coordinately control temporal and spatial expression of FLOWERING LOCUS T in ArabidopsisQ43062277
Distinct roles of CONSTANS target genes in reproductive development of ArabidopsisQ33334634
APETALA1 and SEPALLATA3 interact to promote flower developmentQ33335723
Arabidopsis, the Rosetta stone of flowering time?Q33337109
AGAMOUS-LIKE 24, a dosage-dependent mediator of the flowering signalsQ33337912
Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesisQ33340717
AGL24, SHORT VEGETATIVE PHASE, and APETALA1 redundantly control AGAMOUS during early stages of flower development in ArabidopsisQ33342560
How floral meristems are built.Q33342664
GA4 is the active gibberellin in the regulation of LEAFY transcription and Arabidopsis floral initiationQ33343076
The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in ArabidopsisQ33345219
Direct interaction of AGL24 and SOC1 integrates flowering signals in ArabidopsisQ33345322
Repression of flowering by the miR172 target SMZ.Q33347386
Genetic and spatial interactions between FT, TSF and SVP during the early stages of floral induction in ArabidopsisQ33347539
The Arabidopsis floral meristem identity genes AP1, AGL24 and SVP directly repress class B and C floral homeotic genes.Q33347542
The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1.Q33347619
Regulation of transcription in plants: mechanisms controlling developmental switchesQ33350086
GIGANTEA directly activates Flowering Locus T in Arabidopsis thalianaQ33351687
LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1Q33351760
Uncovering genetic and molecular interactions among floral meristem identity genes in Arabidopsis thalianaQ33352412
Analysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and a leucine-rich repeat protein that promotes flowering.Q33352997
Spatially distinct regulatory roles for gibberellins in the promotion of flowering of Arabidopsis under long photoperiodsQ33353534
Spatial control of flowering by DELLA proteins inArabidopsis thalianaQ33354379
Interlocking feedback loops govern the dynamic behavior of the floral transition in ArabidopsisQ33355561
Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis.Q33355978
Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS.Q33356108
MADS domain transcription factors mediate short-range DNA looping that is essential for target gene expression in ArabidopsisQ33356174
A gene triggering flower formation in ArabidopsisQ33366831
Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flowerQ33433625
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expressionQ33475984
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thalianaQ33801141
LEAFY target genes reveal floral regulatory logic, cis motifs, and a link to biotic stimulus responseQ34178808
Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factorQ34180199
Characterization of MADS-domain transcription factor complexes in Arabidopsis flower developmentQ34246464
Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of controlQ34344299
Single-cell sequencing-based technologies will revolutionize whole-organism scienceQ34360540
ChIA-PET analysis of transcriptional chromatin interactions.Q34394806
PAIR: the predicted Arabidopsis interactome resourceQ34456754
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3Q34558030
Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactionsQ34587822
The DELLA domain of GA INSENSITIVE mediates the interaction with the GA INSENSITIVE DWARF1A gibberellin receptor of Arabidopsis.Q34617019
FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis.Q34836172
MEME-ChIP: motif analysis of large DNA datasetsQ35019674
Shedding light on the circadian clock and the photoperiodic control of floweringQ35032002
BIG: a calossin-like protein required for polar auxin transport in ArabidopsisQ35080357
Role of SVP in the control of flowering time by ambient temperature in ArabidopsisQ35649383
Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA.Q36170785
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in ArabidopsisQ36248592
The timing of developmental transitions in plantsQ36483601
Diverse roles for MADS box genes in Arabidopsis developmentQ36680214
Gibberellins accumulate in the elongating endodermal cells of Arabidopsis rootQ36712494
Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thalianaQ37088665
Reconstitution of 'floral quartets' in vitro involving class B and class E floral homeotic proteinsQ37181549
SEPALLATA3: the 'glue' for MADS box transcription factor complex formation.Q37207169
Flowering time regulation: photoperiod- and temperature-sensing in leavesQ37228089
Floral organ identity: 20 years of ABCsQ37626199
The 'ABC' of MADS domain protein behaviour and interactions.Q37626204
From ABC genes to regulatory networks, epigenetic landscapes and flower morphogenesis: making biological sense of theoretical approachesQ37634696
Ovule development in Arabidopsis: progress and challengeQ37795346
The end of innocence: flowering networks explode in complexityQ37942699
Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studiesQ38032742
Gene networks controlling Arabidopsis thaliana flower development.Q38129455
TWIN SISTER OF FT (TSF) acts as a floral pathway integrator redundantly with FT.Q38325087
Genome‐wide identification of SOC1 and SVP targets during the floral transition in ArabidopsisQ38328374
Orchestration of floral initiation by APETALA1.Q38345200
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).Q38346030
Crosstalk between cold response and flowering in Arabidopsis is mediated through the flowering-time gene SOC1 and its upstream negative regulator FLC.Q38349657
Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15.Q38350319
The SOC1 MADS-box gene integrates vernalization and gibberellin signals for flowering in ArabidopsisQ38519690
Heterologous expression of the chrysanthemum R2R3-MYB transcription factor CmMYB2 enhances drought and salinity tolerance, increases hypersensitivity to ABA and delays flowering in Arabidopsis thalianaQ39451134
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower developmentQ40620169
P433issue17
P304page(s)4731-4745
P577publication date2014-06-09
P1433published inJournal of Experimental BotanyQ6295179
P1476titleThe (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history
P478volume65

Reverse relations

cites work (P2860)
Q35568213A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network
Q41553763Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway
Q38858276An apple rootstock overexpressing a peach CBF gene alters growth and flowering in the scion but does not impact cold hardiness or dormancy.
Q47361832Aquilegia B gene homologs promote petaloidy of the sepals and maintenance of the C domain boundary
Q39137975Chemical control of flowering time
Q46598009Chromatin Immunoprecipitation Assay for the Identification of Arabidopsis Protein-DNA Interactions In Vivo.
Q34541579Circadian Clock and Photoperiodic Flowering in Arabidopsis: CONSTANS Is a Hub for Signal Integration.
Q33360223Co-ordination of Flower Development Through Epigenetic Regulation in Two Model Species: Rice and Arabidopsis
Q36027481De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering
Q46370497Deciphering the complex nature of bolting time regulation in Beta vulgaris.
Q36410883Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor
Q64053664Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction
Q38543368Flowering Locus C's Lessons: Conserved Chromatin Switches Underpinning Developmental Timing and Adaptation
Q26781150From limbs to leaves: common themes in evolutionary diversification of organ form
Q39560904Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties
Q38460291H2A.Z mediates different aspects of chromatin function and modulates flowering responses in Arabidopsis.
Q49631861Haplotype Variation of Flowering Time Genes of Sugar Beet and Its Wild Relatives and the Impact on Life Cycle Regimes
Q89999329Homeologs of Brassica SOC1, a central regulator of flowering time, are differentially regulated due to partitioning of evolutionarily conserved transcription factor binding sites in promoters
Q88979611Large Scale Proteomic Data and Network-Based Systems Biology Approaches to Explore the Plant World
Q92668480Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes in Arabidopsis thaliana
Q38685504Molecular and regulatory mechanisms controlling floral organ development.
Q38411569Molecular phenology in plants: in natura systems biology for the comprehensive understanding of seasonal responses under natural environments
Q38954974Multiple paths to similar germination behavior in Arabidopsis thaliana
Q57066619Quantitative Proteomics Analysis of Lettuce ( L.) Reveals Molecular Basis-Associated Auxin and Photosynthesis with Bolting Induced by High Temperature
Q50140568Regulation of flowering time: a splicy business
Q36247202Reproductive modification in forest plantations: impacts on biodiversity and society
Q89251104SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 influences flowering time, lateral branching, oil quality, and seed yield in Brassica juncea cv. Varuna
Q57024170Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb
Q59333232Strategies for Engineering Reproductive Sterility in Plantation Forests
Q93052405The Major Floral Promoter NtFT5 in Tobacco (Nicotiana tabacum) Is a Promising Target for Crop Improvement
Q54224744The mitogen-activated protein kinase phosphatase PHS1 regulates flowering in Arabidopsis thaliana
Q48233063Tissue-Specific Transcriptomics Reveals an Important Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis.
Q28597807Transcriptomic analysis of heteromorphic stamens in Cassia biscapsularis L
Q48053874Winter Memory throughout the Plant Kingdom: Different Paths to Flowering

Search more.