| scholarly article | Q13442814 |
| P50 | author | Elliot Meyerowitz | Q5365528 |
| Yuling Jiao | Q50541304 | ||
| P2860 | cites work | Transcript length bias in RNA-seq data confounds systems biology | Q21093194 |
| Gibberellin acts through jasmonate to control the expression of MYB21, MYB24, and MYB57 to promote stamen filament growth in Arabidopsis | Q21145010 | ||
| Ultrafast and memory-efficient alignment of short DNA sequences to the human genome | Q21183894 | ||
| Mapping and quantifying mammalian transcriptomes by RNA-Seq | Q22122035 | ||
| RNA-Seq: a revolutionary tool for transcriptomics | Q24596169 | ||
| Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS | Q24601528 | ||
| Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling | Q24651977 | ||
| Distinguishing protein-coding and noncoding genes in the human genome | Q24670087 | ||
| BLAT—The BLAST-Like Alignment Tool | Q24682492 | ||
| mRNA sequence features that contribute to translational regulation in Arabidopsis | Q24791279 | ||
| edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
| The Mechanism by which Cycloheximide and Related Glutarimide Antibiotics Inhibit Peptide Synthesis on Reticulocyte Ribosomes | Q28253608 | ||
| Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses | Q28755945 | ||
| VISTA: computational tools for comparative genomics | Q29547708 | ||
| A translational profiling approach for the molecular characterization of CNS cell types | Q29615252 | ||
| Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics | Q29616134 | ||
| The war of the whorls: genetic interactions controlling flower development | Q29616801 | ||
| A gene expression map of Arabidopsis thaliana development | Q29617330 | ||
| Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes | Q29617907 | ||
| A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development | Q29618436 | ||
| Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA | Q30878993 | ||
| Genome-wide analysis of gene expression during early Arabidopsis flower development | Q33247459 | ||
| HANABA TARANU is a GATA transcription factor that regulates shoot apical meristem and flower development in Arabidopsis | Q33340390 | ||
| Gene expression map of the Arabidopsis shoot apical meristem stem cell niche | Q33346789 | ||
| Early flower development in Arabidopsis | Q33351057 | ||
| A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies | Q33397283 | ||
| Coding-sequence determinants of gene expression in Escherichia coli | Q33428917 | ||
| Genome-wide mapping of alternative splicing in Arabidopsis thaliana | Q33560271 | ||
| RNA-seq: from technology to biology | Q33604404 | ||
| Gene ontology analysis for RNA-seq: accounting for selection bias | Q33861598 | ||
| Widespread translational inhibition by plant miRNAs and siRNAs | Q34011733 | ||
| APL regulates vascular tissue identity in Arabidopsis. | Q34276355 | ||
| Floral homeotic genes are targets of gibberellin signaling in flower development | Q34338219 | ||
| Molecular mechanisms of flower development: an armchair guide | Q34560689 | ||
| Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. | Q34594316 | ||
| Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae | Q34918391 | ||
| Comprehensive splice-site analysis using comparative genomics | Q35013128 | ||
| SPLICE SITE SELECTION IN PLANT PRE-mRNA SPLICING. | Q35687161 | ||
| A genome-wide transcriptional activity survey of rice transposable element-related genes | Q35751625 | ||
| A network of multiple regulatory layers shapes gene expression in fission yeast. | Q35830167 | ||
| Global analyses of mRNA translational control during early Drosophila embryogenesis | Q35850346 | ||
| Regulation of translation via mRNA structure in prokaryotes and eukaryotes | Q36280619 | ||
| Global studies of cell type-specific gene expression in plants | Q36466534 | ||
| Alternative splicing of pre-messenger RNAs in plants in the genomic era. | Q36707492 | ||
| Discovery and revision of Arabidopsis genes by proteogenomics | Q37020709 | ||
| Whole genome transcriptome polymorphisms in Arabidopsis thaliana | Q37038582 | ||
| Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis | Q37114917 | ||
| Statistical inferences for isoform expression in RNA-Seq | Q37153258 | ||
| Splice site requirements and switches in plants. | Q37217628 | ||
| Plant cell types: reporting and sampling with new technologies | Q37226203 | ||
| Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. | Q37394009 | ||
| Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. | Q37425274 | ||
| Getting the message across: cytoplasmic ribonucleoprotein complexes | Q37555688 | ||
| Regulation of plant gene expression by alternative splicing | Q37713917 | ||
| DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | Q38287382 | ||
| Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression | Q38324961 | ||
| Jasmonate controls late development stages of petal growth in Arabidopsis thaliana. | Q43274541 | ||
| Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation | Q43631197 | ||
| Determinants of plant U12-dependent intron splicing efficiency | Q44853494 | ||
| Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana | Q46181088 | ||
| Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana | Q46579204 | ||
| The GATA family of transcription factors in Arabidopsis and rice. | Q47763297 | ||
| The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. | Q48289953 | ||
| A high-resolution root spatiotemporal map reveals dominant expression patterns. | Q50659214 | ||
| Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. | Q51887741 | ||
| Two GATA transcription factors are downstream effectors of floral homeotic gene action in Arabidopsis. | Q51959354 | ||
| Intron retention is a major phenomenon in alternative splicing in Arabidopsis. | Q51990713 | ||
| RABBIT EARS, encoding a SUPERMAN-like zinc finger protein, regulates petal development in Arabidopsis thaliana. | Q52096067 | ||
| Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts | Q60543455 | ||
| Sequence complexity of nuclear and polysomal RNA in leaves of the tobacco plant | Q67352154 | ||
| The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | Q74378512 | ||
| P304 | page(s) | 419 | |
| P577 | publication date | 2010-10-01 | |
| P1433 | published in | Molecular Systems Biology | Q2261043 |
| P1476 | title | Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control | |
| P478 | volume | 6 |
| Q55693171 | A Plant Biologist's Toolbox to Study Translation. |
| Q44805308 | A computational and experimental approach reveals that the 5'-proximal region of the 5'-UTR has a Cis-regulatory signature responsible for heat stress-regulated mRNA translation in Arabidopsis. |
| Q60911940 | A gene expression map of shoot domains reveals regulatory mechanisms |
| Q33361489 | APETALA1 establishes determinate floral meristem through regulating cytokinins homeostasis in Arabidopsis |
| Q37691018 | Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants |
| Q35860653 | Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. |
| Q30275782 | An NXF1 mRNA with a retained intron is expressed in hippocampal and neocortical neurons and is translated into a protein that functions as an Nxf1 cofactor |
| Q37706262 | An mRNA-derived noncoding RNA targets and regulates the ribosome. |
| Q33359349 | An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation |
| Q34986385 | Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families. |
| Q37565732 | Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation |
| Q58090226 | Architecture of gene regulatory networks controlling flower development in Arabidopsis thaliana |
| Q33901421 | Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data |
| Q92197830 | Asymmetric Redundancy of ZERZAUST and ZERZAUST HOMOLOG in Different Accessions of Arabidopsis thaliana |
| Q34938362 | BARE retrotransposons are translated and replicated via distinct RNA pools |
| Q46819785 | Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Enables Time-Resolved Analysis of Protein Synthesis in Native Plant Tissue. |
| Q40493451 | Changes in Polysome Association of mRNA Throughout Growth and Development in Arabidopsis thaliana |
| Q43954038 | Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis |
| Q34177118 | Characterization of putative cis-regulatory elements in genes preferentially expressed in Arabidopsis male meiocytes. |
| Q60923491 | Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress |
| Q51792944 | Complex evolutionary history and diverse domain organization of SET proteins suggest divergent regulatory interactions. |
| Q38157823 | Complexity of the alternative splicing landscape in plants. |
| Q60939721 | Computational and Experimental Tools to Monitor the Changes in Translation Efficiency of Plant mRNA on a Genome-Wide Scale: Advantages, Limitations, and Solutions |
| Q28656356 | Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species |
| Q37973026 | Control of cytoplasmic translation in plants |
| Q30862437 | Control of flowering by ambient temperature. |
| Q33356108 | Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS. |
| Q33358305 | Cytokinin pathway mediates APETALA1 function in the establishment of determinate floral meristems in Arabidopsis |
| Q35123235 | DNA methylation and expression of the EgDEF1 gene and neighboring retrotransposons in mantled somaclonal variants of oil palm. |
| Q35970681 | Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements |
| Q38667242 | Differences in DNA-binding specificity of floral homeotic protein complexes predict organ-specific target genes |
| Q35970819 | Dynamic Light Regulation of Translation Status in Arabidopsis thaliana |
| Q41623658 | Emerging Roles and Landscape of Translating mRNAs in Plants |
| Q89530752 | Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA |
| Q28080795 | Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis |
| Q41892926 | Evaluation of TRAP-sequencing technology with a versatile conditional mouse model. |
| Q35981852 | Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era. |
| Q34662492 | Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments. |
| Q42107706 | Extensive translational regulation during seed germination revealed by polysomal profiling. |
| Q42774596 | Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa). |
| Q48268761 | Floral Organogenesis: When Knowing Your ABCs Is Not Enough. |
| Q40923129 | Gene network analysis of Arabidopsis thaliana flower development through dynamic gene perturbations |
| Q38129455 | Gene networks controlling Arabidopsis thaliana flower development. |
| Q33362721 | Genome-wide analyses for dissecting gene regulatory networks in the shoot apical meristem |
| Q35095176 | Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis. |
| Q34203922 | In vivo biochemistry: quantifying ion and metabolite levels in individual cells or cultures of yeast. |
| Q38065785 | Insights into post-transcriptional regulation during legume-rhizobia symbiosis. |
| Q45852350 | Integrated Translatome and Proteome: Approach for Accurate Portraying of Widespread Multifunctional Aspects of Trichoderma |
| Q52672265 | Intron retention in viruses and cellular genes: Detention, border controls and passports. |
| Q38453889 | Maize reas1 Mutant Stimulates Ribosome Use Efficiency and Triggers Distinct Transcriptional and Translational Responses. |
| Q29617829 | Modular regulatory principles of large non-coding RNAs |
| Q38685504 | Molecular and regulatory mechanisms controlling floral organ development. |
| Q51728696 | Nonsense-mediated mRNA decay modulates FLM-dependent thermosensory flowering response in Arabidopsis. |
| Q37854178 | Pattern, growth, and control |
| Q30316425 | Patterns of gene expression during Arabidopsis flower development from the time of initiation to maturation |
| Q36000058 | Positional distribution of transcription factor binding sites in Arabidopsis thaliana |
| Q34147600 | Predicting the impact of alternative splicing on plant MADS domain protein function |
| Q59767894 | Profiling of translatomes of in vivo-grown pollen tubes reveals genes with roles in micropylar guidance during pollination in Arabidopsis |
| Q38882157 | RCAS: an RNA centric annotation system for transcriptome-wide regions of interest |
| Q34400215 | Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells |
| Q30434297 | Regeneration in the era of functional genomics and gene network analysis |
| Q50017141 | Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. |
| Q33350086 | Regulation of transcription in plants: mechanisms controlling developmental switches |
| Q54998021 | Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development. |
| Q36190240 | Ribosome-associated ncRNAs: an emerging class of translation regulators |
| Q35196606 | SEED: efficient clustering of next-generation sequences |
| Q53147955 | SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. |
| Q38558121 | Screening the Molecular Framework Underlying Local Dendritic mRNA Translation. |
| Q46327868 | Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection in Medicago truncatula |
| Q38166292 | Specification of floral organs in Arabidopsis. |
| Q46889127 | Suppression of Photosynthetic Gene Expression in Roots Is Required for Sustained Root Growth under Phosphate Deficiency |
| Q36408185 | TRAP-rc, Translating Ribosome Affinity Purification from Rare Cell Populations of Drosophila Embryos |
| Q38057042 | Technologies for systems-level analysis of specific cell types in plants |
| Q50719657 | Temperature-dependent regulation of flowering by antagonistic FLM variants. |
| Q46767410 | The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history |
| Q57139707 | The HTPmod Shiny application enables modeling and visualization of large-scale biological data |
| Q33358475 | The Stem Cell Niche in Leaf Axils Is Established by Auxin and Cytokinin in Arabidopsis |
| Q26991596 | The analytical landscape of static and temporal dynamics in transcriptome data |
| Q52802423 | The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens. |
| Q46920865 | Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism |
| Q60952982 | Translating Flowering Time From Arabidopsis thaliana to Brassicaceae and Asteraceae Crop Species |
| Q44870504 | Translation regulation in plants: an interesting past, an exciting present and a promising future. |
| Q37056064 | Translational Regulation of Cytoplasmic mRNAs |
| Q35075061 | Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis |
| Q38836568 | Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis. |
| Q38266157 | Translatome profiling: methods for genome-scale analysis of mRNA translation |
| Q48155764 | Trimethylguanosine Synthase1 (TGS1) Is Essential for Chilling Tolerance. |
| Q87241364 | Two Arabidopsis loci encode novel eukaryotic initiation factor 4E isoforms that are functionally distinct from the conserved plant eukaryotic initiation factor 4E |
| Q35811144 | Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis |
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