| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1030326679 |
| P356 | DOI | 10.1038/NG1875 |
| P698 | PubMed publication ID | 16951679 |
| P5875 | ResearchGate publication ID | 6837663 |
| P50 | author | Thomas R. Gingeras | Q30517922 |
| P2093 | author name string | Ian Bell | |
| Philipp Kapranov | |||
| Srinka Ghosh | |||
| Jeff Long | |||
| J Robert Manak | |||
| Antonio Piccolboni | |||
| Frederic Biemar | |||
| Jill Cheng | |||
| Sujit Dike | |||
| Victor Sementchenko | |||
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| Global identification of human transcribed sequences with genome tiling arrays | Q29614335 | ||
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| Splice site selection, rate of splicing, and alternative splicing on nascent transcripts | Q30461752 | ||
| Gene disruptions using P transposable elements: an integral component of the Drosophila genome project | Q33737040 | ||
| Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation | Q34556124 | ||
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| The dorsal morphogen gradient regulates the mesoderm determinant twist in early Drosophila embryos | Q38333258 | ||
| A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac | Q42045441 | ||
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| P433 | issue | 10 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Drosophila melanogaster | Q130888 |
| P304 | page(s) | 1151-1158 | |
| P577 | publication date | 2006-09-03 | |
| P1433 | published in | Nature Genetics | Q976454 |
| P1476 | title | Biological function of unannotated transcription during the early development of Drosophila melanogaster | |
| P478 | volume | 38 |
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| Q41880960 | At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana |
| Q36570593 | Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system |
| Q37623991 | Challenges for modeling global gene regulatory networks during development: insights from Drosophila. |
| Q42366091 | Characterization of genomic regulatory domains conserved across the genus Drosophila |
| Q42644007 | Chromatin insulators specifically associate with different levels of higher-order chromatin organization in Drosophila |
| Q28756588 | Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome |
| Q33808761 | Clusters of temporal discordances reveal distinct embryonic patterning mechanisms in Drosophila and anopheles |
| Q92618015 | Coding or Noncoding, the Converging Concepts of RNAs |
| Q37111303 | Coherent but overlapping expression of microRNAs and their targets during vertebrate development |
| Q33567054 | Comments on sequence normalization of tiling array expression |
| Q41980619 | Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species |
| Q33610866 | Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays |
| Q24651231 | Complex architecture and regulated expression of the Sox2ot locus during vertebrate development |
| Q24650770 | Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene |
| Q33398184 | Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster |
| Q30837098 | Computational RNomics of drosophilids |
| Q36993043 | Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila |
| Q37247048 | Conserved introns reveal novel transcripts in Drosophila melanogaster |
| Q21145036 | Context differences reveal insulator and activator functions of a Su(Hw) binding region |
| Q33777982 | Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence |
| Q58883616 | DeepCAGE: Genome-Wide Mapping of Transcription Start Sites |
| Q35223503 | Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. |
| Q57687633 | Definition of Promotome-Transcriptome Architecture Using CAGEscan |
| Q31127104 | Detection of RNA structures in porcine EST data and related mammals. |
| Q37273604 | Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster |
| Q30583101 | Developmental and evolutionary basis for drought tolerance of the Anopheles gambiae embryo |
| Q37666209 | Developmental gene regulation in the era of genomics |
| Q21563495 | Differentiating protein-coding and noncoding RNA: challenges and ambiguities |
| Q34086895 | Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum |
| Q34712340 | Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures |
| Q36287888 | Drosophila Genomes by the Baker's Dozen. Preface |
| Q35561152 | Dynamic reprogramming of chromatin accessibility during Drosophila embryo development |
| Q34683257 | Enrichment of mRNA-like noncoding RNAs in the divergence of Drosophila males. |
| Q22122220 | Evolution of genes and genomes on the Drosophila phylogeny |
| Q42803649 | Evolutionary flux of canonical microRNAs and mirtrons in Drosophila |
| Q33492330 | Evolutionary modeling and prediction of non-coding RNAs in Drosophila |
| Q52760269 | Expansion of the mutually exclusive spliced exome in Drosophila. |
| Q35861396 | Exploiting Drosophila genetics to understand microRNA function and regulation |
| Q35729838 | Exploring strategies for protein trapping in Drosophila |
| Q37207163 | Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. |
| Q33399874 | Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos |
| Q34732710 | Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci |
| Q40815405 | Genome-scale analysis of positionally relocated genes |
| Q42225375 | Genome-wide allele- and strand-specific expression profiling |
| Q37173731 | Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members |
| Q33287472 | Genome-wide identification of alternatively spliced mRNA targets of specific RNA-binding proteins |
| Q41855625 | Genome-wide identification of spliced introns using a tiling microarray |
| Q29617047 | Genome-wide transcription and the implications for genomic organization |
| Q36103645 | Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells |
| Q24684539 | Genomic regulatory blocks underlie extensive microsynteny conservation in insects |
| Q21145659 | Getting started in tiling microarray analysis |
| Q41864064 | High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans |
| Q37661361 | Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs |
| Q30104466 | How complexity increases in development: An analysis of the spatial-temporal dynamics of 1218 genes in Drosophila melanogaster |
| Q33352612 | Hundreds of putatively functional small open reading frames in Drosophila |
| Q43123995 | Identification and classification of ncRNA molecules using graph properties |
| Q38119544 | Identification and function of long non-coding RNAs |
| Q33291597 | Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury |
| Q34037810 | In depth annotation of the Anopheles gambiae mosquito midgut transcriptome. |
| Q33671329 | Intron delays and transcriptional timing during development |
| Q36869063 | Intron length increases oscillatory periods of gene expression in animal cells |
| Q46250864 | Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species |
| Q36672362 | Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses |
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| Q36004668 | Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray |
| Q57634895 | Mapping the strand-specific transcriptome of fission yeast |
| Q36138083 | Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster |
| Q43067706 | Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome |
| Q35652748 | Multiple In Vivo Biological Processes Are Mediated by Functionally Redundant Activities of Drosophila mir-279 and mir-996. |
| Q35229357 | Neural-specific elongation of 3' UTRs during Drosophila development |
| Q56990781 | Noncoding RNA |
| Q34014009 | Noncoding RNA in development |
| Q24655674 | On the origin of new genes in Drosophila |
| Q24605596 | Origins and evolution of microRNA genes in Drosophila species |
| Q33282299 | Peptides encoded by short ORFs control development and define a new eukaryotic gene family |
| Q35004344 | Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications |
| Q27335058 | Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion |
| Q24673598 | Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions |
| Q41642383 | Promoter Architecture and Sex-Specific Gene Expression in Daphnia pulex. |
| Q37038574 | Proteomics studies confirm the presence of alternative protein isoforms on a large scale |
| Q35122217 | Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models |
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| Q33444290 | Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx |
| Q33367118 | Stability and dynamics of polycomb target sites in Drosophila development. |
| Q24684571 | Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes |
| Q34058205 | Temporal coordination of gene networks by Zelda in the early Drosophila embryo. |
| Q37390854 | The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer |
| Q24673673 | The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci |
| Q34548316 | The Drosophila melanogaster transcriptome by paired-end RNA sequencing |
| Q33641913 | The Release 5.1 annotation of Drosophila melanogaster heterochromatin |
| Q28754888 | The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution |
| Q51693767 | The birth and death of microRNA genes in Drosophila. |
| Q21168558 | The developmental expression dynamics of Drosophila melanogaster transcription factors |
| Q29617262 | The developmental transcriptome of Drosophila melanogaster |
| Q22122309 | The evolution and functional diversification of animal microRNA genes |
| Q36768233 | The expanding universe of noncoding RNAs |
| Q21245321 | The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA |
| Q36312128 | The many landscapes of recombination in Drosophila melanogaster |
| Q37589131 | The plasticity of the mammalian transcriptome |
| Q34548309 | The transcriptional diversity of 25 Drosophila cell lines |
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| Q21563555 | Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm |
| Q33797842 | Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level |
| Q46865397 | Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes. |
| Q37380696 | Tweek, an evolutionarily conserved protein, is required for synaptic vesicle recycling |
| Q33745487 | Unlocking the secrets of the genome |
| Q29615721 | Using FlyAtlas to identify better Drosophila melanogaster models of human disease |
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| Q36800435 | Widespread and extensive lengthening of 3' UTRs in the mammalian brain |
| Q33292248 | cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome. |
| Q33289997 | echinus, required for interommatidial cell sorting and cell death in the Drosophila pupal retina, encodes a protein with homology to ubiquitin-specific proteases |
| Q37340390 | omb and circumstance |
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