Protocol for analyzing protein ensemble structures from chemical cross-links using DynaXL.

scientific article published on 20 November 2017

Protocol for analyzing protein ensemble structures from chemical cross-links using DynaXL. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S41048-017-0044-9
P932PMC publication ID5719800
P698PubMed publication ID29238747

P50authorChun TangQ53830244
Zhu LiuQ87157305
P2093author name stringMeng-Qiu Dong
Xu Dong
Zhou Gong
Yue-He Ding
P2860cites workIncreasing the Depth of Mass-Spectrometry-Based Structural Analysis of Protein Complexes through the Use of Multiple Cross-Linkers.Q54392746
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Molecular architecture of the 26S proteasome holocomplex determined by an integrative approachQ28259014
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Analysis of nidogen-1/laminin γ1 interaction by cross-linking, mass spectrometry, and computational modeling reveals multiple binding modesQ28544860
Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer FormationQ28553667
Visualizing the Ensemble Structures of Protein Complexes Using Chemical Cross-Linking Coupled with Mass SpectrometryQ28833842
Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozymeQ29547923
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Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational BiologyQ30379311
Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational statesQ30385368
Identification of cross-linked peptides from complex samples.Q30418939
Mass spectrometry supported determination of protein complex structureQ30428635
Constructing 3D heterogeneous hydrogels from electrically manipulated prepolymer droplets and crosslinked microgelsQ30827176
Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexesQ33854206
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Visualization of transient encounter complexes in protein-protein association.Q34575140
Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognitionQ35867082
ThreaDom: extracting protein domain boundary information from multiple threading alignmentsQ36960736
A mass spectrometry-based hybrid method for structural modeling of protein complexesQ38583775
ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assemblyQ38789142
Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.Q40492197
Crystallographic refinement of ligand complexesQ40886998
Modeling Protein Excited-state Structures from "Over-length" Chemical Cross-links.Q48137501
The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structuresQ50279315
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P304page(s)100-108
P577publication date2017-11-20
P1433published inBiophysics reportsQ27727219
P1476titleProtocol for analyzing protein ensemble structures from chemical cross-links using DynaXL
P478volume3

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cites work (P2860)
Q63359284ABA/ASB Omics 2018
Q88990701Permanent Photodynamic Cholecystokinin 1 Receptor Activation: Dimer-to-Monomer Conversion
Q93089159Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data

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