PepSweetener: A Web-Based Tool to Support Manual Annotation of Intact Glycopeptide MS Spectra

scientific article published on 3 October 2017

PepSweetener: A Web-Based Tool to Support Manual Annotation of Intact Glycopeptide MS Spectra is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/PRCA.201700069
P698PubMed publication ID28975713

P50authorDaniel KolarichQ42589925
Marcin J DomagalskiQ56660206
Frédérique LisacekQ28609783
P2093author name stringAndreia Almeida
Davide Alocci
P2860cites workExPASy: SIB bioinformatics resource portalQ42232951
Sweet-Heart - an integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptidesQ44714916
The glycosylation of human serum IgD and IgE and the accessibility of identified oligomannose structures for interaction with mannan-binding lectinQ45158584
A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins.Q45971253
Unimod: Protein modifications for mass spectrometryQ47403412
Determination of site-specific glycan heterogeneity on glycoproteinsQ47650180
Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry.Q51715919
Large-scale assignment of N-glycosylation sites using complementary enzymatic deglycosylation.Q54297336
Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database searchQ28680669
UniCarbKB: building a knowledge platform for glycoproteomicsQ30050744
Glycoproteomics based on tandem mass spectrometry of glycopeptidesQ30827600
GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA.Q30976132
Comparison of methods for profiling O-glycosylation: Human Proteome Organisation Human Disease Glycomics/Proteome Initiative multi-institutional study of IgA1Q33812834
Site-specific glycosylation of secretory immunoglobulin A from human colostrumQ33920673
The glycosylation and structure of human serum IgA1, Fab, and Fc regions and the role of N-glycosylation on Fcα receptor interactionsQ34453640
Mass spectrometry based glycoproteomics--from a proteomics perspectiveQ34454989
Symbol Nomenclature for Graphical Representations of GlycansQ34500799
GlycoPep Detector: a tool for assigning mass spectrometry data of N-linked glycopeptides on the basis of their electron transfer dissociation spectraQ34627486
Glycoproteomics: past, present and futureQ34970552
Site-specific N-glycosylation analysis of human immunoglobulin e.Q35059586
GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides.Q35623058
The Art of Destruction: Optimizing Collision Energies in Quadrupole-Time of Flight (Q-TOF) Instruments for Glycopeptide-Based GlycoproteomicsQ35884818
The promise of protein glycosylation for personalised medicine.Q35961527
GlycoPep grader: a web-based utility for assigning the composition of N-linked glycopeptidesQ36074398
Automated glycopeptide analysis--review of current state and future directionsQ36860100
SweetSEQer, simple de novo filtering and annotation of glycoconjugate mass spectraQ36910827
Automated assignments of N- and O-site specific glycosylation with extensive glycan heterogeneity of glycoprotein mixtures.Q36954745
Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease.Q37372335
Vertebrate protein glycosylation: diversity, synthesis and functionQ37601831
Gas-phase dissociation of glycosylated peptide ionsQ37992551
Carbohydrates on Proteins: Site-Specific Glycosylation Analysis by Mass SpectrometryQ38526671
Algorithms and design strategies towards automated glycoproteomics analysis.Q38686132
Detailed characterization of the O-linked glycosylation of the neuropilin-1 c/MAM-domain.Q38997374
Automating mass spectrometry-based quantitative glycomics using aminoxy tandem mass tag reagents with SimGlycanQ40908368
MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MS² approachQ41514465
P577publication date2017-10-03
P1433published inProteomics - Clinical ApplicationsQ15754475
P1476titlePepSweetener: A Web-Based Tool to Support Manual Annotation of Intact Glycopeptide MS Spectra