Frédérique Lisacek

French bioinformatician

Born 2000-01-01

Frédérique Lisacek is …
instance of (P31):
humanQ5

External links are
P10272Archive ouverte UNIGE ID157
P2456DBLP author ID57/1534
P6178Dimensions author ID0674012177.79
P1960Google Scholar author IDwudILEcAAAAJ
P269IdRef ID179738690
P6634LinkedIn personal profile IDfrederique-lisacek-6028275
P2798Loop ID191226
P549Mathematics Genealogy Project ID172683
P496ORCID iD0000-0002-0948-4537
P1153Scopus author ID6701751116
P10861Springer Nature person ID0674012177.79
P214VIAF ID313566701
P2002X usernameGlycomicsExpasy

P27country of citizenshipFranceQ142
P185doctoral studentNadia El-MabroukQ102120633
P69educated atPierre and Marie Curie UniversityQ1144549
P108employerUniversity of GenevaQ503473
CALIPHOQ19845668
P101field of workprotein-protein interactionQ896177
interactomicsQ1063716
Semantic WebQ54837
glycoproteinQ187126
glycoproteomicsQ5572649
P735given nameFrédériqueQ19869333
FrédériqueQ19869333
P1412languages spoken, written or signedFrenchQ150
EnglishQ1860
P103native languageFrenchQ150
P106occupationbioinformaticianQ2904006
P21sex or genderfemaleQ6581072

Reverse relations

author (P50)
Q64990406A Bioinformatics View of Glycan⁻Virus Interactions.
Q33474338A combined CXCL10, CXCL8 and H-FABP panel for the staging of human African trypanosomiasis patients
Q33878787A community proposal to integrate proteomics activities in ELIXIR
Q48457359A multiparameter panel method for outcome prediction following aneurysmal subarachnoid hemorrhage
Q57002218A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space
Q33411386A simple workflow to increase MS2 identification rate by subsequent spectral library search
Q33392038A suite of tools to analyse and publish 2-DE data.
Q92450454A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer
Q42823216Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics
Q39618978Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides.
Q34013168An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates
Q57002309Analytical Bioinformatics for Proteomics
Q34992882Animal board invited review: advances in proteomics for animal and food sciences
Q92252500Architecture and Evolution of Blade Assembly in β-propeller Lectins
Q27967929Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE
Q102330369Automatic Annotation and Dereplication of Tandem Mass Spectra of Peptidic Natural Products
Q52382943Automatic identification of group I intron cores in genomic DNA sequences.
Q57002283Bioinformatics Tools for Detecting Post-Translational Modifications in Mass Spectrometry Data
Q37636124Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics?
Q30665066Clustering and filtering tandem mass spectra acquired in data-independent mode.
Q30050743Codon usage and gene function are related in sequences of Arabidopsis thaliana
Q27334359Comparative Proteomic Profiling of Ehrlichia ruminantium Pathogenic Strain and Its High-Passaged Attenuated Strain Reveals Virulence and Attenuation-Associated Proteins
Q46986844Comparative analysis of Leishmania exoproteomes: implication for host-pathogen interactions
Q42233031ConoDictor: a tool for prediction of conopeptide superfamilies
Q47846498Consistency checks for characterizing protein forms
Q91887495Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project"
Q56880445Data Integration in Proteomics
Q47973906Database interrogation algorithms for identification of proteins in proteomic separations
Q39289132Databases and Associated Tools for Glycomics and Glycoproteomics.
Q110520475Dealing with the Ambiguity of Glycan Substructure Search
Q30050739Deciphering the human nucleolar proteome
Q31088265Dedicated Software Enhancing Data-independent Acquisition Methods in Mass Spectrometry
Q39780510Early activation of the fatty acid metabolism pathway by chronic high glucose exposure in rat insulin secretory beta-cells
Q30583658EasyProt--an easy-to-use graphical platform for proteomics data analysis
Q57002288Erratum: Image analysis tools and emerging algorithms for expression proteomics
Q97417249Examining and fine-tuning the selection of glycan compositions with GlyConnect Compozitor
Q57002352Exon prediction in eucaryotic genomes
Q56944538Exploring the UniCarbKB Database
Q51964451Extracting key sentences with latent argumentative structuring.
Q33860694Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support
Q44918661Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
Q60398382Functional annotation of bacterial sugars
Q39821534Functional specifications of an integrated proteomics information management and analysis platform.
Q104477874GAG-DB, the New Interface of the Three-Dimensional Landscape of Glycosaminoglycans
Q33487886Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).
Q52243386Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes.
Q90687752GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical
Q47784465GlyTouCan: an accessible glycan structure repository.
Q58881352Glycan Pattern Search
Q111697649Glycan semantic model applications in substructure search
Q39903691Glycation isotopic labeling with 13C-reducing sugars for quantitative analysis of glycated proteins in human plasma
Q36171754GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination
Q39491579GlycoSiteAlign: Glycosite Alignment Based on Glycan Structure.
Q47688959Glycoforest 1.0.
Q95391705Glycoinformatics
Q57002233Glycomics@ExPASy: Bridging the gap
Q39143849Glycosaminoglycanomics: where we are.
Q43509048Human hemolysate glycated proteome
Q39664527Identification and classification of conopeptides using profile Hidden Markov Models
Q58856572Image Analysis Tools in Proteomics
Q35671298Image analysis tools and emerging algorithms for expression proteomics
Q28538643Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information
Q47354726Investigating protein domain combinations in complete proteomes
Q90977859Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides
Q33743216LC/MS data processing for label-free quantitative analysis.
Q57002225Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project
Q101566524LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification
Q43801749MIAPEGelDB, a web-based submission tool and public repository for MIAPE gel electrophoresis documents
Q31031416Mining Large Scale Tandem Mass Spectrometry Data for Protein Modifications Using Spectral Libraries
Q30978492MzJava: An open source library for mass spectrometry data processing
Q42561472NETTAB 2012 on "Integrated Bio-Search".
Q38763051Navigating the Glycome Space and Connecting the Glycoproteome
Q91135238Norine: update of the nonribosomal peptide resource
Q36280986Optimization by infusion of multiple reaction monitoring transitions for sensitive quantification of peptides by liquid chromatography/mass spectrometry
Q36519896Optimization of human dendritic cell sample preparation for mass spectrometry-based proteomic studies
Q44844454PICarver: a software tool and strategy for peptides isoelectric focusing
Q57002266PanelomiX: A threshold-based algorithm to create panels of biomarkers
Q35529506Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells--a benchmarking study
Q47252619PepSweetener: A Web-Based Tool to Support Manual Annotation of Intact Glycopeptide MS Spectra
Q36312190Peptidomic and transcriptomic profiling of four distinct spider venoms
Q43967868Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies
Q48625061Probabilistic alignment of motifs with sequences
Q35455128Processing strategies and software solutions for data-independent acquisition in mass spectrometry
Q28551581Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search
Q36601042Proteome informatics II: bioinformatics for comparative proteomics
Q112294251Proteome-wide prediction of bacterial carbohydrate-binding proteins as a tool for understanding commensal and pathogen colonisation of the vaginal microbiome
Q33875524QuickMod: A tool for open modification spectrum library searches
Q30998330Ranking Fragment Ions Based on Outlier Detection for Improved Label-Free Quantification in Data-Independent Acquisition LC-MS/MS.
Q57002344Shaping biological knowledge
Q38513187Shaping biological knowledge: applications in proteomics
Q92043427Structural Database for Lectins and the UniLectin Web Platform
Q92008616Structure and engineering of tandem repeat lectins
Q38120215SugarBind database (SugarBindDB): a resource of pathogen lectins and corresponding glycan targets
Q57002249SugarBindDB SugarBindDB : Resource of Pathogen Pathogen Lectin-Glycan Interactions Lectin-glycan interactions
Q36434892SugarBindDB, a resource of glycan-mediated host-pathogen interactions
Q60916345SugarSketcher: Quick and Intuitive Online Glycan Drawing
Q64086779Sweet and Sour : Glycoproteomics and Phosphoproteomics Reveal New Players in Physiology and Pathogenesis
Q44756537SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid
Q57002329Systems Biology
Q90406474The GlySpace Alliance: toward a collaborative global glycoinformatics community
Q123285784The SIB Swiss Institute of Bioinformatics Semantic Web of data
Q27968301The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases
Q35753826The Use of Variable Q1 Isolation Windows Improves Selectivity in LC-SWATH-MS Acquisition
Q28286763The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server
Q112679882The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application
Q33590394Toolboxes for a standardised and systematic study of glycans
Q92092405Towards a standardized bioinformatics infrastructure for N- and O-glycomics
Q41655087Uncovering intense protein diversification in a cone snail venom gland using an integrative venomics approach
Q52666749Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopes.
Q30050750UniCarb-DB: a database resource for glycomic discovery
Q56944555UniCarbKB: Emergent Knowledgebase for Glycomics Glycomics
Q30050744UniCarbKB: building a knowledge platform for glycoproteomics
Q38421228UniCarbKB: putting the pieces together for glycomics research
Q57205821UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands
Q37661417Unrestricted identification of modified proteins using MS/MS.
Q35590688Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding.
Q70978145Updates to the Symbol Nomenclature for Glycans guidelines
Q33223420Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library
Q37817126Using bioinformatic resources in the proteomic analysis of biological fluids
Q81392269Using protein motif combinations to update KEGG pathway maps and orthologue tables
Q48779066Very fast identification of RNA motifs in genomic DNA. Application to tRNA search in the yeast genome
Q31065622Web-based MS/MS data analysis
Q33496217X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry
Q30050695pROC: an open-source package for R and S+ to analyze and compare ROC curves
Q91430520rBAN: retro-biosynthetic analysis of nonribosomal peptides
Q31153625swissPIT: a novel approach for pipelined analysis of mass spectrometry data

Q102120633Nadia El-Mabroukdoctoral advisorP184
Q11143023816th Annual International Biocuration Conference (2023)has program committee memberP5804

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