Databases and Associated Tools for Glycomics and Glycoproteomics.

scientific article published on January 2017

Databases and Associated Tools for Glycomics and Glycoproteomics. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/978-1-4939-6493-2_18
P698PubMed publication ID27743371

P50authorFrédérique LisacekQ28609783
Göran WidmalmQ49553973
Matthew P CampbellQ57208449
Nicki PackerQ60666488
Julien MariethozQ60974763
Jodie L AbrahamsQ63364249
Niclas G KarlssonQ47650210
P2093author name stringPauline M Rudd
Chunsheng Jin
Barbara Adamczyk
Davide Alocci
Jonas Ståhle
Elaine Mullen
Miguel A Rojas-Macias
P2860cites workGlycomeDB - integration of open-access carbohydrate structure databasesQ21284198
The Protein Data BankQ24515306
NCBI GEO: archive for functional genomics data sets--updateQ24595691
EUROCarbDB: An open-access platform for glycoinformaticsQ24602364
LMSD: LIPID MAPS structure databaseQ24675592
The CCPN data model for NMR spectroscopy: development of a software pipelineQ27860601
The neXtProt knowledgebase on human proteins: current statusQ28255663
KEGG as a glycome informatics resourceQ28261384
Chemoenzymatic synthesis of O-mannosylpeptides in solution and on solid phase.Q50501683
CASPER: a computer program used for structural analysis of carbohydratesQ52439568
JCGGDB: Japan Consortium for Glycobiology and Glycotechnology Database.Q53296460
NMR chemical shift prediction of glycans: application of the computer program CASPER in structural analysis.Q53584757
Glycosyltransferase functions of E. coli O-antigens.Q54394941
Informatics and Analytical Tools for Glycan Analysis and the Development of BiotherapeuticsQ59212325
UniProt: a hub for protein informationQ29547457
The carbohydrate-active enzymes database (CAZy) in 2013Q29617118
Proteomics. Tissue-based map of the human proteomeQ29617248
UniCarbKB: building a knowledge platform for glycoproteomicsQ30050744
UniCarb-DB: a database resource for glycomic discoveryQ30050750
GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research.Q30482956
Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repositoryQ30486117
GlycoBase and autoGU: resources for interpreting HPLC-glycan dataQ30907679
Computer-assisted structural analysis of polysaccharides with an extended version of CASPER using 1H- and 13C-n.m.r. dataQ31035217
GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sourcesQ34315781
Annotation of post-translational modifications in the Swiss-Prot knowledge baseQ34324183
Characterization of fibrinogen glycosylation and its importance for serum/plasma N-glycome analysisQ34476817
GlyTouCan 1.0--The international glycan structure repositoryQ34498371
Sequence determination of oligosaccharides and regular polysaccharides using NMR spectroscopy and a novel Web-based version of the computer program CASPER.Q34505417
GLYCAM06: a generalizable biomolecular force field. CarbohydratesQ34686342
GlycoPattern: a web platform for glycan array miningQ34974686
Symbol nomenclature for glycan representationQ35012151
UniPep--a database for human N-linked glycosites: a resource for biomarker discoveryQ35606070
GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determinationQ36171754
KEGG as a reference resource for gene and protein annotationQ36434599
SugarBindDB, a resource of glycan-mediated host-pathogen interactionsQ36434892
Clinical relevance of the Helicobacter pylori gene for blood-group antigen-binding adhesinQ36556507
Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technologyQ36848271
Dissecting the molecular basis of the role of the O-mannosylation pathway in disease: α-dystroglycan and forms of muscular dystrophyQ37609175
Glyco3D: a portal for structural glycosciencesQ38300556
UniCarbKB: putting the pieces together for glycomics researchQ38421228
Automatic structure determination of regular polysaccharides based solely on NMR spectroscopyQ39081346
The Complex Carbohydrate Structure DatabaseQ40665706
EK3D: an E. coli K antigen 3-dimensional structure databaseQ40891571
Computer-assisted structural analysis of oligosaccharides using CASPERQ43888458
Complete (1)H and (13)C NMR chemical shift assignments of mono-, di-, and trisaccharides as basis for NMR chemical shift predictions of polysaccharides using the computer program casperQ43998366
Development of the ECODAB into a relational database for Escherichia coli O-antigens and other bacterial polysaccharides.Q45022724
Structural analysis of glycans by NMR chemical shift prediction.Q46077061
The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developmentsQ46156566
Complete (1)H and (13)C NMR chemical shift assignments of mono- to tetrasaccharides as basis for NMR chemical shift predictions of oligosaccharides using the computer program CASPER.Q46172819
HPLC-based analysis of serum N-glycans on a 96-well plate platform with dedicated database software.Q46808539
Computer-assisted structural analysis of oligo- and polysaccharides: an extension of CASPER to multibranched structuresQ47737143
P407language of work or nameEnglishQ1860
P1104number of pages30
P304page(s)235-264
P577publication date2017-01-01
P1433published inMethods in Molecular BiologyQ15752859
P1476titleDatabases and Associated Tools for Glycomics and Glycoproteomics
P478volume1503

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cites work (P2860)
Q47408673CHO-Omics Review: The Impact of Current and Emerging Technologies on Chinese Hamster Ovary Based Bioproduction
Q52592578Distinctive and Complementary MS2 Fragmentation Characteristics for Identification of Sulfated Sialylated N-Glycopeptides by nanoLC-MS/MS Workflow.
Q47264934GlycoDomainViewer: A bioinformatics tool for contextual exploration of glycoproteomes
Q55091449Glycosylation of extracellular vesicles: current knowledge, tools and clinical perspectives.
Q98893296How and why plants and human N-glycans are different: Insight from molecular dynamics into the "glycoblocks" architecture of complex carbohydrates
Q47212798Human disease glycomics: technology advances enabling protein glycosylation analysis - part 1.
Q55880564Mass spectrometry for glycan biomarker discovery
Q39124498Quantitative glycomics using liquid phase separations coupled to mass spectrometry.
Q39096219Recent Advances in the Analysis of Complex Glycoproteins.
Q52608892Simple Method for De Novo Structural Determination of Underivatised Glucose Oligosaccharides.
Q109649568The glycosylation in SARS-CoV-2 and its receptor ACE2
Q49339093The tumour glyco-code as a novel immune checkpoint for immunotherapy