QSdpR: Viral quasispecies reconstruction via correlation clustering

scientific article published on 18 December 2017

QSdpR: Viral quasispecies reconstruction via correlation clustering is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.YGENO.2017.12.007
P698PubMed publication ID29268961

P2093author name stringHaris Vikalo
Shreepriya Das
Somsubhra Barik
P2860cites workA tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencersQ21266698
Complete Genome Sequences of Zika Virus Strains Isolated from the Blood of Patients in Thailand in 2014 and the Philippines in 2012Q24261252
Viral mutation ratesQ24611162
A rhesus macaque model of Asian-lineage Zika virus infectionQ25160538
Viral quasispecies assembly via maximal clique enumerationQ28541589
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing dataQ28743680
Quasispecies theory and the behavior of RNA virusesQ33641547
Accurate viral population assembly from ultra-deep sequencing dataQ33760353
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populationsQ34044256
QuRe: software for viral quasispecies reconstruction from next-generation sequencing dataQ34076081
ART: a next-generation sequencing read simulator.Q34243055
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platformQ35542373
SDhaP: haplotype assembly for diploids and polyploids via semi-definite programmingQ35577169
HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture ModelQ40555769
Probabilistic inference of viral quasispecies subject to recombinationQ41814480
Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants.Q42208022
What is a quasispecies?Q56060179
Improved approximation algorithms for MAXk-CUT and MAX BISECTIONQ57401556
Performance evaluation of some clustering algorithms and validity indicesQ61941613
P921main subjectviral quasispeciesQ104765291
P577publication date2017-12-18
P1433published inGenomicsQ5533503
P1476titleQSdpR: Viral quasispecies reconstruction via correlation clustering

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cites work (P2860)
Q90166311Evaluation of haplotype callers for next-generation sequencing of viruses
Q59351138Inter- and Intra-Host Nucleotide Variations in Hepatitis A Virus in Culture and Clinical Samples Detected by Next-Generation Sequencing

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