| scholarly article | Q13442814 |
| P356 | DOI | 10.1105/TPC.110.081281 |
| P8608 | Fatcat ID | release_5fx2jg37r5enfl2peows3g7myi |
| P932 | PMC publication ID | 3123947 |
| P698 | PubMed publication ID | 21540436 |
| P5875 | ResearchGate publication ID | 51096294 |
| P50 | author | Gavin C. Conant | Q30518114 |
| Michaël Bekaert | Q41780923 | ||
| P2093 | author name string | J Chris Pires | |
| Patrick P Edger | |||
| P2860 | cites work | The B73 Maize Genome: Complexity, Diversity, and Dynamics | Q22065899 |
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| The hidden duplication past of Arabidopsis thaliana | Q24536123 | ||
| Noise in gene expression: origins, consequences, and control | Q24537307 | ||
| Preservation of duplicate genes by complementary, degenerative mutations | Q24548042 | ||
| Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution | Q24563612 | ||
| AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis | Q24654215 | ||
| Diet and the evolution of human amylase gene copy number variation | Q24657119 | ||
| Collective dynamics of 'small-world' networks | Q27861064 | ||
| Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts | Q27933473 | ||
| Endless Forms | Q28111897 | ||
| On the possibility of constructive neutral evolution | Q28141783 | ||
| Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events | Q28186749 | ||
| Consequences of genome duplication | Q28257505 | ||
| What is flux balance analysis? | Q28275348 | ||
| Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice | Q28469041 | ||
| Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana | Q28748597 | ||
| Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales | Q28748995 | ||
| Genes encoding hub and bottleneck enzymes of the Arabidopsis metabolic network preferentially retain homeologs through whole genome duplication | Q28751745 | ||
| The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution | Q28752488 | ||
| Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event | Q28754782 | ||
| Increased glycolytic flux as an outcome of whole-genome duplication in yeast | Q28757241 | ||
| Mefloquine resistance in Plasmodium falciparum and increased pfmdr1 gene copy number | Q29615128 | ||
| Turning a hobby into a job: how duplicated genes find new functions | Q29615889 | ||
| AmiGO: online access to ontology and annotation data | Q29616191 | ||
| Polyploidy and angiosperm diversification | Q29617868 | ||
| The evolution of transcriptional regulation in eukaryotes | Q29618447 | ||
| The evolution of gene duplications: classifying and distinguishing between models | Q29619358 | ||
| Enhanced copper tolerance in Silene vulgaris (Moench) Garcke populations from copper mines is associated with increased transcript levels of a 2b-type metallothionein gene | Q31000756 | ||
| A role for gene duplication and natural variation of gene expression in the evolution of metabolism | Q33324415 | ||
| The Systems Biology Research Tool: evolvable open-source software | Q33347636 | ||
| Posttranslational regulation impacts the fate of duplicated genes | Q33734025 | ||
| Yeast genome evolution in the post-genome era. | Q33745262 | ||
| Natural history and evolutionary principles of gene duplication in fungi | Q47597341 | ||
| The centrality of a graph. | Q53028250 | ||
| The origins of genomic duplications in Arabidopsis. | Q53900352 | ||
| The small world inside large metabolic networks. | Q55016270 | ||
| The evolution of functionally novel proteins after gene duplication. | Q55065818 | ||
| Copy Number Alterations among Mammalian Enzymes Cluster in the Metabolic Network | Q60285378 | ||
| Glyphosate selection of gene amplification in suspension cultures of 3 plant species | Q74267726 | ||
| Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment | Q77154618 | ||
| Ploidy regulation of gene expression | Q77978027 | ||
| Fermentative lifestyle in yeasts belonging to the Saccharomyces complex | Q79613638 | ||
| Gene copy number evolution during tetraploid cotton radiation | Q82923432 | ||
| Modeling gene and genome duplications in eukaryotes | Q33936694 | ||
| How did Saccharomyces evolve to become a good brewer? | Q33993786 | ||
| A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome | Q34174958 | ||
| Dosage sensitivity and the evolution of gene families in yeast | Q34213245 | ||
| Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits | Q34276677 | ||
| The molecular basis of dominance. | Q34283978 | ||
| Robustness of cellular functions | Q34348549 | ||
| Duplication and divergence: the evolution of new genes and old ideas | Q34371877 | ||
| Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts | Q34502616 | ||
| Genome duplication and the origin of angiosperms | Q34526229 | ||
| Origin and early evolution of angiosperms | Q34786966 | ||
| Escape from adaptive conflict after duplication in an anthocyanin pathway gene | Q34791156 | ||
| Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes | Q35006352 | ||
| Functional analysis of gene duplications in Saccharomyces cerevisiae | Q35641570 | ||
| Emerging principles of regulatory evolution | Q35808449 | ||
| Paralogs in polyploids: one for all and all for one? | Q35999672 | ||
| A portrait of copy-number polymorphism in Drosophila melanogaster | Q36288935 | ||
| Role of selection in fixation of gene duplications | Q36293779 | ||
| Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity | Q36526608 | ||
| Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon | Q36595920 | ||
| The gene balance hypothesis: from classical genetics to modern genomics | Q36733469 | ||
| The gene regulatory logic of transcription factor evolution | Q37172305 | ||
| Resurrecting the role of transcription factor change in developmental evolution. | Q37194983 | ||
| Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects | Q37202078 | ||
| Advancing genetic theory and application by metabolic quantitative trait loci analysis | Q37518944 | ||
| Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition | Q37539972 | ||
| Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes | Q41626345 | ||
| All duplicates are not equal: the difference between small-scale and genome duplication | Q43049884 | ||
| A genome-scale metabolic model of Arabidopsis and some of its properties | Q43276356 | ||
| Quantitative variation and selection of esterase gene amplification in Culex pipiens. | Q44141402 | ||
| Identification of an Arabidopsis mitochondrial succinate-fumarate translocator. | Q44277922 | ||
| Regulation dynamics of WGD genes during yeast metabolic oscillation | Q44323052 | ||
| Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana | Q44349262 | ||
| Metabolic adaptation after whole genome duplication. | Q45922745 | ||
| Evidence for an ancient whole-genome duplication event in rice and other cereals. | Q47263268 | ||
| Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. | Q47320719 | ||
| P433 | issue | 5 | |
| P921 | main subject | polyploidy | Q213410 |
| metabolic network | Q2263094 | ||
| P304 | page(s) | 1719-1728 | |
| P577 | publication date | 2011-05-03 | |
| P1433 | published in | The Plant Cell | Q3988745 |
| P1476 | title | Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints | |
| P478 | volume | 23 |
| Q53327243 | A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions. |
| Q35151597 | A synergism between adaptive effects and evolvability drives whole genome duplication to fixation |
| Q34409061 | Allopolyploidy, diversification, and the Miocene grassland expansion |
| Q39979480 | Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta). |
| Q100736962 | Chromosome-level genome assembly of a parent species of widely cultivated azaleas |
| Q36835562 | Comprehensive analysis of the polygalacturonase and pectin methylesterase genes in Brassica rapa shed light on their different evolutionary patterns |
| Q36958018 | Conservation and Expression Patterns Divergence of Ascorbic Acid d-mannose/l-galactose Pathway Genes in Brassica rapa |
| Q30827097 | Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism |
| Q33860160 | Developmental dynamics of Kranz cell transcriptional specificity in maize leaf reveals early onset of C4-related processes |
| Q53272805 | Different Modes of Gene Duplication Show Divergent Evolutionary Patterns and Contribute Differently to the Expansion of Gene Families Involved in Important Fruit Traits in Pear (Pyrus bretschneideri). |
| Q34996492 | Different patterns of gene structure divergence following gene duplication in Arabidopsis |
| Q99634809 | Differential Evolution of α-Glucan Water Dikinase (GWD) in Plants |
| Q38492493 | Dispersion and domestication shaped the genome of bread wheat |
| Q47367980 | Dissecting the complex molecular evolution and expression of polygalacturonase gene family in Brassica rapa ssp. chinensis |
| Q36295367 | Divergence in Enzymatic Activities in the Soybean GST Supergene Family Provides New Insight into the Evolutionary Dynamics of Whole-Genome Duplicates. |
| Q34979523 | Divergent evolutionary and expression patterns between lineage specific new duplicate genes and their parental paralogs in Arabidopsis thaliana |
| Q38401793 | Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention |
| Q28730773 | Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution |
| Q36377240 | Early genome duplications in conifers and other seed plants |
| Q39612420 | Escape from preferential retention following repeated whole genome duplications in plants |
| Q26747070 | Evolution of Gene Duplication in Plants |
| Q33590746 | Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication |
| Q48229488 | Evolutionary and genetic features of drug targets. |
| Q38444829 | Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors. |
| Q42774596 | Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa). |
| Q48318996 | Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. |
| Q38014422 | Flux-balance modeling of plant metabolism. |
| Q38490885 | Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants |
| Q46613613 | Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms. |
| Q36236350 | Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines |
| Q37976849 | Genome and gene duplications and gene expression divergence: a view from plants |
| Q37277395 | Genome-Wide Gene/Genome Dosage Imbalance Regulates Gene Expressions in Synthetic Brassica napus and Derivatives (AC, AAC, CCA, CCAA). |
| Q38651873 | Genome-wide Analysis and Expression Divergence of the Trihelix family in Brassica Rapa: Insight into the Evolutionary Patterns in Plants |
| Q42059429 | Grand Challenges in Plant Systems Biology: Closing the Circle(s). |
| Q64269443 | Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry |
| Q28647254 | Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum |
| Q38438045 | Identification and characterization of genes on a single subgenome in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring'. |
| Q38793458 | Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis |
| Q55237555 | Integrating Phylogenetic and Network Approaches to Study Gene Family Evolution: The Case of the AGAMOUS Family of Floral Genes. |
| Q46813615 | Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis |
| Q35653862 | Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants |
| Q36229016 | Lineage-Specific Evolutionary Histories and Regulation of Major Starch Metabolism Genes during Banana Ripening |
| Q51327446 | Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis. |
| Q35685433 | Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid |
| Q85823552 | Molecular evolution and transcriptional regulation of the oilseed rape proline dehydrogenase genes suggest distinct roles of proline catabolism during development |
| Q35838135 | Molecular evolution, characterization, and expression analysis of SnRK2 gene family in Pak-choi (Brassica rapa ssp. chinensis) |
| Q28597678 | Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics |
| Q91908020 | Origin and evolution of the octoploid strawberry genome |
| Q53418217 | Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. |
| Q35047590 | Patterns of evolutionary conservation of ascorbic acid-related genes following whole-genome triplication in Brassica rapa |
| Q58698937 | Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica |
| Q28654226 | Polyploid evolution of the Brassicaceae during the Cenozoic era |
| Q42265701 | Polyploidy and the evolution of complex traits |
| Q46350167 | Polyploidy as a chromosomal component of stochastic noise: variable scalar multiples of the diploid chromosome complement in the invertebrate species Girardia schubarti from Brazil. |
| Q38457786 | Population Level Purifying Selection and Gene Expression Shape Subgenome Evolution in Maize. |
| Q84347894 | Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa |
| Q51144281 | Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. |
| Q64069847 | Rapid functional divergence after small-scale gene duplication in grasses |
| Q47613483 | Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity. |
| Q35546791 | Redundancy and metabolic function of the glutamine synthetase gene family in poplar |
| Q39552751 | Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomeaum. |
| Q35619592 | Selection for higher gene copy number after different types of plant gene duplications |
| Q47190138 | Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates |
| Q33931697 | Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence |
| Q37184701 | Spatial Colocalization of Human Ohnolog Pairs Acts to Maintain Dosage-Balance |
| Q28657578 | Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution |
| Q92306923 | The Evolution of Gene Duplicates in Angiosperms and the Impact of Protein-Protein Interactions and the Mechanism of Duplication |
| Q38218016 | The causes and molecular consequences of polyploidy in flowering plants |
| Q37716884 | The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias |
| Q91987169 | The lasting after-effects of an ancient polyploidy on the genomes of teleosts |
| Q46553634 | The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols |
| Q93116199 | Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus |
| Q38271151 | Variation in transcriptome size: are we getting the message? |
| Q54688146 | Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. |
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