Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

scientific article published on 23 April 2007

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1365-313X.2007.03097.X
P698PubMed publication ID17470057

P50authorJim Leebens-MackQ30112517
Hongzhi KongQ47147690
Michael FröhlichQ61467165
Claude W dePamphilisQ92093351
Lena L LandherrQ117222699
P2093author name stringHong Ma
P2860cites workAnalysis of the genome sequence of the flowering plant Arabidopsis thalianaQ22122387
P433issue5
P921main subjectangiospermsQ25314
gene duplicationQ746284
P304page(s)873-885
P577publication date2007-04-23
P1433published inThe Plant JournalQ15766987
P1476titlePatterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth
P478volume50

Reverse relations

cites work (P2860)
Q41307677A barley SKP1-like protein controls abundance of the susceptibility factor RACB and influences the interaction of barley with the barley powdery mildew fungus
Q64120509Adaptive and degenerative evolution of the family in
Q47344330CRISPR/Cas9-mediated knockout of PiSSK1 reveals essential role of S-locus F-box protein-containing SCF complexes in recognition of non-self S-RNases during cross-compatible pollination in self-incompatible Petunia inflata
Q35527767Characterization of the Ubiquitin-Conjugating Enzyme Gene Family in Rice and Evaluation of Expression Profiles under Abiotic Stresses and Hormone Treatments
Q34594000Chlorovirus Skp1-binding ankyrin repeat protein interplay and mimicry of cellular ubiquitin ligase machinery
Q33676919Combining Comparative Sequence and Genomic Data to Ascertain Phylogenetic Relationships and Explore the Evolution of the Large GDSL-Lipase Family in Land Plants
Q91656424Comparative Analysis of the PIN Auxin Transporter Gene Family in Different Plant Species: A Focus on Structural and Expression Profiling of PINs in Solanum tuberosum
Q35844152Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays
Q34671745Composition, roles, and regulation of cullin-based ubiquitin e3 ligases.
Q39996455Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus
Q36184147CrWSKP1, an SKP1-like Gene, Is Involved in the Self-Incompatibility Reaction of "Wuzishatangju" (Citrus reticulata Blanco)
Q61814390Cysteine-Rich Receptor-Like Kinase Gene Family Identification in the Phaseolus Genome and Comparative Analysis of Their Expression Profiles Specific to Mycorrhizal and Rhizobial Symbiosis
Q92220384Decrypting tubby-like protein gene family of multiple functions in starch root crop cassava
Q33755463Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution
Q57165961Dicer-like and RNA-dependent RNA polymerase gene family identification and annotation in the cultivated Solanum tuberosum and its wild relative S. commersonii
Q35992676Divergence and Redundancy in CSLD2 and CSLD3 Function During Arabidopsis Thaliana Root Hair and Female Gametophyte Development
Q33858499Divergent Evolutionary Patterns of NAC Transcription Factors Are Associated with Diversification and Gene Duplications in Angiosperm
Q42732933Diversification and Specialization of Plant RBR Ubiquitin Ligases
Q36665491Duplication of OsHAP family genes and their association with heading date in rice
Q92909544Evaluation of the diversity and phylogenetic implications of NAC transcription factor members of four reference species from the different embryophytic plant groups
Q35050919Evidence of natural selection acting on a polymorphic hybrid incompatibility locus in Mimulus
Q44074650Evolution Analysis of the Aux/IAA Gene Family in Plants Shows Dual Origins and Variable Nuclear Localization Signals
Q64249972Evolution Analysis of the Fasciclin-Like Arabinogalactan Proteins in Plants Shows Variable Fasciclin-AGP Domain Constitutions
Q90341493Evolution and expression analyses of the MADS-box gene family in Brassica napus
Q37070653Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification
Q34837810Evolution of plant HECT ubiquitin ligases
Q33531557Evolution of plant RNA polymerase IV/V genes: evidence of subneofunctionalization of duplicated NRPD2/NRPE2-like paralogs in Viola (Violaceae).
Q50876103Evolution, expression analysis, and functional verification of Catharanthus roseus RLK1-like kinase (CrRLK1L) family proteins in pear (Pyrus bretchneideri).
Q89224434Evolutionary History of the Glycoside Hydrolase 3 (GH3) Family Based on the Sequenced Genomes of 48 Plants and Identification of Jasmonic Acid-Related GH3 Proteins in Solanum tuberosum
Q64097775Evolutionary and functional analysis of the plant-specific NADPH oxidase gene family in L
Q39730423Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice
Q28748270Evolutionary history and stress regulation of the lectin superfamily in higher plants
Q36882226Expansion Mechanisms and Evolutionary History on Genes Encoding DNA Glycosylases and Their Involvement in Stress and Hormone Signaling.
Q91659030Expansion and Functional Diversification of SKP1-Like Genes in Wheat (Triticum aestivum L.).
Q34584805Expansion mechanisms and functional divergence of the glutathione s-transferase family in sorghum and other higher plants.
Q61804051Expansion of genes in the genome induces characteristic floral scent production
Q30402650Expression and integrated network analyses revealed functional divergence of NHX-type Na+/H+ exchanger genes in poplar
Q33774739Expression profiling and integrative analysis of the CESA/CSL superfamily in rice
Q43513344GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana
Q97519378Genome-Wide Analysis of Serine Carboxypeptidase-Like Acyltransferase Gene Family for Evolution and Characterization of Enzymes Involved in the Biosynthesis of Galloylated Catechins in the Tea Plant (Camellia sinensis)
Q36396539Genome-Wide Analysis of the Fasciclin-Like Arabinogalactan Protein Gene Family Reveals Differential Expression Patterns, Localization, and Salt Stress Response in Populus
Q90189400Genome-Wide Analysis of the Lateral Organ Boundaries Domain Gene Family in Brassica Napus
Q48182240Genome-Wide Identification and Characterization of the Potato bHLH Transcription Factor Family
Q36724851Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii.
Q50034160Genome-Wide Identification, Characterization, and Expression Profiling of Glutathione S-Transferase (GST) Family in Pumpkin Reveals Likely Role in Cold-Stress Tolerance.
Q36814201Genome-Wide Identification, Classification, and Expression Analysis of Amino Acid Transporter Gene Family in Glycine Max.
Q35852717Genome-Wide Identification, Phylogenetic and Expression Analyses of the Ubiquitin-Conjugating Enzyme Gene Family in Maize
Q61815670Genome-scale identification, classification, and tissue specific expression analysis of late embryogenesis abundant (LEA) genes under abiotic stress conditions in Sorghum bicolor L
Q64963666Genome-wide analyses of the bHLH gene family reveals structural and functional characteristics in the aquatic plant Nelumbo nucifera.
Q41625337Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato
Q41587538Genome-wide analysis of PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE (PDAT) genes in plants reveals the eudicot-wide PDAT gene expansion and altered selective pressures acting on the core eudicot PDAT paralogs
Q37548535Genome-wide analysis of soybean HD-Zip gene family and expression profiling under salinity and drought treatments
Q36109508Genome-wide analysis of the CaHsp20 gene family in pepper: comprehensive sequence and expression profile analysis under heat stress
Q48217178Genome-wide analysis of the potato Hsp20 gene family: identification, genomic organization and expression profiles in response to heat stress.
Q90207009Genome-wide analysis of the rice J-protein family: identification, genomic organization, and expression profiles under multiple stresses
Q33611120Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape
Q90611314Genome-wide characterization and expression analysis of soybean trihelix gene family
Q51892006Genome-wide expansion and expression divergence of the basic leucine zipper transcription factors in higher plants with an emphasis on sorghum.
Q40458373Genome-wide identification and evolution of HECT genes in soybean.
Q90178684Genome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L. (Moench)
Q92316198Genome-wide identification and functional analysis of the cyclic nucleotide-gated channel gene family in Chinese cabbage
Q41094034Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence
Q39666128Genome-wide identification of the expansin gene family in tobacco (Nicotiana tabacum).
Q46890414Genome-wide identification, characterisation and expression analysis of the MADS-box gene family in Prunus mume
Q64055392Genome-wide identification, characterization and expression analysis of the non-specific lipid transfer proteins in potato
Q34040873Genome-wide identification, phylogeny, duplication, and expression analyses of two-component system genes in Chinese cabbage (Brassica rapa ssp. pekinensis).
Q35080373Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis
Q92663640Genome-wide investigation of the ZF-HD gene family in Tartary buckwheat (Fagopyrum tataricum)
Q34482092Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.).
Q35462395Genome-wide survey of the soybean GATA transcription factor gene family and expression analysis under low nitrogen stress
Q81625811Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar
Q86155774Genomic characterization, phylogenetic comparison and differential expression of the cyclic nucleotide-gated channels gene family in pear (Pyrus bretchneideri Rehd.).
Q33582797Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).
Q55069499GsSKP21, a Glycine soja S-phase kinase-associated protein, mediates the regulation of plant alkaline tolerance and ABA sensitivity.
Q39078818Identification and phylogenetic analysis of late embryogenesis abundant proteins family in tomato (Solanum lycopersicum).
Q34252880Identification of a Skp1-like protein interacting with SFB, the pollen S determinant of the gametophytic self-incompatibility in Prunus
Q42681971Identification of a canonical SCF(SLF) complex involved in S-RNase-based self-incompatibility of Pyrus (Rosaceae).
Q64096705Identification of the GRAS gene family in the genome provides insight into its role in stem swelling in stem mustard
Q59793474Integrated physiologic, genomic and transcriptomic strategies involving the adaptation of allotetraploid rapeseed to nitrogen limitation
Q57034339Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)
Q59159182Intron evolution in a phylogenetic perspective: Divergent trends in the two copies of the duplicateddefgene inImpatiensL. (Balsaminaceae)
Q41073082Lack of S-RNase-Based Gametophytic Self-Incompatibility in Orchids Suggests That This System Evolved after the Monocot-Eudicot Split.
Q51907229Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice.
Q28606671Molecular Characterization and Expression Profiling of NAC Transcription Factors in Brachypodium distachyon L
Q39175889Molecular characterization and functional analysis of the OsPsbR gene family in rice
Q51928068Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice.
Q54076707Molecular characterization, expression pattern, and functional analysis of the OsIRL gene family encoding intracellular Ras-group-related LRR proteins in rice.
Q51756924Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.).
Q37016531Molecular evolution and functional divergence of soluble starch synthase genes in cassava (manihot esculenta crantz).
Q38894921Molecular evolution and gene expression differences within the HD-Zip transcription factor family of Zea mays L.
Q41303197Molecular evolution and species-specific expansion of the NAP members in plants
Q42594425Molecular evolution of the CPP-like gene family in plants: insights from comparative genomics of Arabidopsis and rice
Q28680749Molecular evolutionary analysis of the Alfin-like protein family in Arabidopsis lyrata, Arabidopsis thaliana, and Thellungiella halophila
Q51875644Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice.
Q34131528Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array
Q46271406New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication.
Q35029570Nonstructural protein P7-2 encoded by Rice black-streaked dwarf virus interacts with SKP1, a core subunit of SCF ubiquitin ligase.
Q51360046Overexpression of PSK1, a SKP1-like gene homologue, from Paeonia suffruticosa, confers salinity tolerance in Arabidopsis.
Q36051905Phylogenetic Analysis, Lineage-Specific Expansion and Functional Divergence of seed dormancy 4-Like Genes in Plants
Q33649437Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants
Q54102648Phylogenetic analyses unravel the evolutionary history of NAC proteins in plants.
Q33813059Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift
Q33841470Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function
Q33314151Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea
Q64892760Regulation of SCFTIR1/AFBs E3 ligase assembly by S-nitrosylation of Arabidopsis SKP1-like1 impacts on auxin signaling.
Q112706425Retracted: Genome-wide analysis of sucrose synthase family in soybean and their expression in response to abiotic stress and seed development
Q36369238Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway
Q51847884SKP1 is involved in abscisic acid signalling to regulate seed germination, stomatal opening and root growth in Arabidopsis thaliana.
Q46607837SKP1-like-related genes interact with various F-box proteins and may form SCF complexes with Cullin-F-box proteins in wheat
Q33611959Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies
Q43244399Structural, expression and interaction analysis of rice SKP1-like genes
Q47236804The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.
Q36437659The SKP1-like gene family of Arabidopsis exhibits a high degree of differential gene expression and gene product interaction during development
Q34445881The SLEEPER genes: a transposase-derived angiosperm-specific gene family
Q90080237The Soybean Laccase Gene Family: Evolution and Possible Roles in Plant Defense and Stem Strength Selection
Q64975917The divergence and positive selection of the plant-specific BURP-containing protein family.
Q54117634The grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses.
Q35006798The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups
Q28755388The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula
Q36145168The similar and different evolutionary trends of MATE family occurred between rice and Arabidopsis thaliana
Q90115103Zinc Finger-Homeodomain Genes: Evolution, Functional Differentiation, and Expression Profiling Under Flowering-Related Treatments and Abiotic Stresses in Plants

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