A grid layout algorithm for automatic drawing of biochemical networks

scientific article published on 27 January 2005

A grid layout algorithm for automatic drawing of biochemical networks is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bioinformatics/LiK05
P356DOI10.1093/BIOINFORMATICS/BTI290
P698PubMed publication ID15677705
P5875ResearchGate publication ID8053812

P2093author name stringHiroyuki Kurata
Weijiang Li
P2860cites workCytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
Osprey: a network visualization systemQ24791459
VisANT: an online visualization and analysis tool for biological interaction dataQ24800519
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network modelsQ28212902
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integrationQ33196105
CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle.Q38427403
Model building and model checking for biochemical processesQ38427945
PathFinder: reconstruction and dynamic visualization of metabolic pathwaysQ42166021
Visualization and analysis of protein interactionsQ43943534
New computational approaches for analysis of cis-regulatory networks.Q44003926
Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulationsQ46110064
A fast layout algorithm for protein interaction networksQ47446611
A graph layout algorithm for drawing metabolic pathwaysQ48678928
Cellware--a multi-algorithmic software for computational systems biology.Q52003601
BioLayout--an automatic graph layout algorithm for similarity visualization.Q52053831
MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systemsQ56974677
P433issue9
P407language of work or nameEnglishQ1860
P921main subjectautomationQ184199
P304page(s)2036-2042
P577publication date2005-01-27
P1433published inBioinformaticsQ4914910
P1476titleA grid layout algorithm for automatic drawing of biochemical networks
P478volume21

Reverse relations

cites work (P2860)
Q30883688A generic algorithm for layout of biological networks
Q21284756A multilevel gamma-clustering layout algorithm for visualization of biological networks
Q92982667A new grid- and modularity-based layout algorithm for complex biological networks
Q33611226An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information
Q33276950An efficient grid layout algorithm for biological networks utilizing various biological attributes
Q28484119Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps
Q33400111BFL: a node and edge betweenness based fast layout algorithm for large scale networks
Q33274604Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
Q33689423Diffusion model based spectral clustering for protein-protein interaction networks
Q41811417Extended CADLIVE: a novel graphical notation for design of biochemical network maps and computational pathway analysis
Q49980041FindPrimaryPairs: An efficient algorithm for predicting element-transferring reactant/product pairs in metabolic networks
Q30493271LucidDraw: efficiently visualizing complex biochemical networks within MATLAB.
Q64112013Metabopolis: scalable network layout for biological pathway diagrams in urban map style
Q33394119POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
Q33803769QAPgrid: a two level QAP-based approach for large-scale data analysis and visualization
Q27008867Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
Q36525183The cognitive phenotype of Down syndrome: insights from intracellular network analysis
Q28709938Visualization of protein interaction networks: problems and solutions
Q33354103Visualizing global properties of large complex networks

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