Systematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks.

scientific article published on 31 March 2014

Systematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1105/TPC.113.122242
P8608Fatcat IDrelease_3jpiva32ujcj7a5nyrmwv74sdu
P932PMC publication ID4001402
P698PubMed publication ID24685999
P5875ResearchGate publication ID261255659

P50authorWout BoerjanQ38321564
Yvan SaeysQ48577555
Bartel VanholmeQ55233433
Ruben VanholmeQ88049307
Kris MorreelQ88102753
Yves Van de PeerQ28468994
P2093author name stringFachuang Lu
John Ralph
Oana Dima
P2860cites workThe secondary metabolism of Arabidopsis thaliana: growing like a weedQ36110250
Biology and biochemistry of glucosinolatesQ36466513
Biosynthesis of glucosinolates--gene discovery and beyondQ37715312
Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species viewsQ38022502
Class targeted metabolomics: ESI ion trap screening methods for glucosinolates based on MSn fragmentationQ38391236
Metabolite annotations based on the integration of mass spectral informationQ39597367
Profiling of oligolignols reveals monolignol coupling conditions in lignifying poplar xylemQ42164234
Isolation and structure elucidation of 5'-O-beta-D-glucopyranosyl-dihydroascorbigen from Cardamine diphylla rhizomeQ42951161
Determination of flavone, flavonol, and flavanone aglycones by negative ion liquid chromatography electrospray ion trap mass spectrometryQ43636317
Observing and interpreting correlations in metabolomic networks.Q48594438
AtMetExpress development: a phytochemical atlas of Arabidopsis developmentQ63640495
Phytochemistry meets genome analysis, and beyondQ73010068
Assessing the effect of reactive oxygen species on Escherichia coli using a metabolome approachQ73579686
Metabolite profiling: from diagnostics to systems biologyQ80513306
Characterisation of glucosinolates using electrospray ion trap and electrospray quadrupole time-of-flight mass spectrometryQ80594792
Collision-induced dissociation of the A + 2 isotope ion facilitates glucosinolates structure elucidation by electrospray ionization-tandem mass spectrometry with a linear quadrupole ion trapQ84349982
In silico fragmentation for computer assisted identification of metabolite mass spectraQ21284354
Metabolite Identification Using Automated Comparison of High-Resolution Multistage Mass Spectral TreesQ27156570
Optimization and testing of mass spectral library search algorithms for compound identificationQ27807493
MassBank: a public repository for sharing mass spectral data for life sciencesQ27809667
Proposed minimum reporting standards for chemical analysisQ27921801
Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systemsQ28346109
Identifying the Unknowns by Aligning Fragmentation TreesQ28530233
Metabolite profiling for plant functional genomicsQ28540952
Protein function annotation by homology-based inferenceQ29048177
The large-scale organization of metabolic networksQ29547498
METLIN: a metabolite mass spectral databaseQ29614808
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identificationQ29616057
'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic dataQ29784220
Profiling of Arabidopsis secondary metabolites by capillary liquid chromatography coupled to electrospray ionization quadrupole time-of-flight mass spectrometryQ30320528
Towards fully automated structure-based function prediction in structural genomics: a case studyQ30360004
GMD@CSB.DB: the Golm Metabolome DatabaseQ30482803
Analysis of highly polar compounds of plant origin: combination of hydrophilic interaction chromatography and electrospray ion trap mass spectrometry.Q31036569
Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detectionQ33206722
Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppmQ33241529
Consistency analysis of metabolic correlation networksQ33300172
Negative atmospheric pressure chemical ionisation low-energy collision activation mass spectrometry for the characterisation of flavonoids in extracts of fresh herbsQ33422837
Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass SpectrometryQ33426025
Mass spectrometry-based fragmentation as an identification tool in lignomicsQ33675209
Computational mass spectrometry for metabolomics: identification of metabolites and small moleculesQ33714757
Systematic functional analysis of the yeast genomeQ34067467
Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass SpectrometryQ34272743
The future of metabolic phytochemistry: larger numbers of metabolites, higher resolution, greater understandingQ34582551
P433issue3
P304page(s)929-945
P577publication date2014-03-31
P1433published inThe Plant CellQ3988745
P1476titleSystematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks.
P478volume26

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cites work (P2860)
Q48124892A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism.
Q92688561A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms
Q46304953ACCERBATIN, a small molecule at the intersection of auxin and reactive oxygen species homeostasis with herbicidal properties
Q50137458Advances in computational metabolomics and databases deepen the understanding of metabolisms.
Q36037584Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.
Q93186830Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics
Q41874696Boosting Sensitivity in Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Tandem Mass Spectrometry for Product Ion Analysis of Monoterpene Indole Alkaloids
Q39108892Characterization of poplar metabotypes via mass difference enrichment analysis
Q91749850Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae
Q62020442Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae
Q52732794Contrasting cadmium resistance strategies in two metallicolous populations of Arabidopsis halleri.
Q114864640Database-independent molecular formula annotation using Gibbs sampling through ZODIAC
Q42271448Degradation of lignin β-aryl ether units in Arabidopsis thaliana expressing LigD, LigF and LigG from Sphingomonas paucimobilis SYK-6.
Q47709138Different Routes for Conifer- and Sinapaldehyde and Higher Saccharification upon Deficiency in the Dehydrogenase CAD1.
Q91405328Exploring novel secondary metabolites from natural products using pre-processed mass spectral data
Q46634347Expression and functional analyses of a putative phenylcoumaran benzylic ether reductase in Arabidopsis thaliana.
Q46629344Flavonols Mediate Root Phototropism and Growth through Regulation of Proliferation-to-Differentiation Transition
Q27902332Fragmentation trees reloaded
Q91259842Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing
Q49024149Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6.
Q27702925MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
Q48042617Maize Tricin-Oligolignol Metabolites and Their Implications for Monocot Lignification.
Q30883144MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments.
Q28074539Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis
Q46854185Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade
Q56927708Metabotype variation in a field population of tansy plants influences aphid host selection
Q31036754Mining molecular structure databases: Identification of small molecules based on fragmentation mass spectrometry data
Q93333406Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome
Q111148886Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation
Q43488047Phenylcoumaran benzylic ether reductase prevents accumulation of compounds formed under oxidative conditions in poplar xylem
Q93081266Polyphenolic Characterization, Antioxidant, and Cytotoxic Activities of Mangifera indica Cultivars from Costa Rica
Q36179301Searching molecular structure databases with tandem mass spectra using CSI:FingerID.
Q49158105Small glycosylated lignin oligomers are stored in Arabidopsis leaf vacuoles.
Q35616106Syringyl lignin production in conifers: Proof of concept in a Pine tracheary element system
Q28082514The essential role of coumarin secretion for Fe acquisition from alkaline soil
Q35715135Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

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