A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes.

scientific article published on 11 January 2007

A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.YGENO.2006.12.002
P698PubMed publication ID17222528
P5875ResearchGate publication ID6578772

P50authorLiang-Hu QuQ30524430
Zhanpeng HuangQ42876361
P2093author name stringHui Zhou
Bei-Bei Li
Chong-Jian Chen
P2860cites workCajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAsQ24536429
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Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAsQ24537463
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Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expressionQ24539974
Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilisQ24540282
Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cellsQ24555109
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genomeQ24563506
Identification of 10 novel snoRNA gene clusters from Arabidopsis thalianaQ24601877
RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAsQ24676223
A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotesQ24812999
Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform ExtractionQ25938986
A computational screen for methylation guide snoRNAs in yeastQ28137615
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouseQ28198621
Plant snoRNAs: functional evolution and new modes of gene expressionQ28202730
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A mammalian gene with introns instead of exons generating stable RNA productsQ28273163
Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoaQ28294449
Phylogenetic shadowing and computational identification of human microRNA genesQ28302536
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNAQ28775786
VISTA : visualizing global DNA sequence alignments of arbitrary lengthQ29614270
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functionsQ29616485
A computational search for box C/D snoRNA genes in the Drosophila melanogaster genomeQ33204619
The Schizosaccharomyces pombe mgU6-47 gene is required for 2'-O-methylation of U6 snRNA at A41.Q33560593
Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrpQ33988569
RPG: the Ribosomal Protein Gene databaseQ34284566
Modification of U6 spliceosomal RNA is guided by other small RNAsQ34482644
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiaeQ41355893
Location of 2(')-O-methyl nucleotides in 26S rRNA and methylation guide snoRNAs in Caenorhabditis elegansQ44173789
Different expression strategy: multiple intronic gene clusters of box H/ACA snoRNA in Drosophila melanogasterQ45003535
Both subunits of U2AF recognize the 3' splice site in Caenorhabditis elegansQ47069458
Isolation of eight novel Caenorhabditis elegans small RNAsQ47353180
A search for H/ACA snoRNAs in yeast using MFE secondary structure predictionQ48248750
Maintaining a conserved methylation in plant and insect U2 snRNA through compensatory mutation by nucleotide insertion.Q51339362
mRNA surveillance of expressed pseudogenes in C. elegans.Q54662131
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genomeQ56272005
Numerous potentially functional but non-genic conserved sequences on human chromosome 21Q57161881
Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected]Q71468310
Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cellsQ73727076
P433issue4
P921main subjectCaenorhabditis elegansQ91703
P304page(s)490-501
P577publication date2007-01-11
P1433published inGenomicsQ5533503
P1476titleA combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes.
P478volume89

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cites work (P2860)
Q34968595A comparative genome-wide study of ncRNAs in trypanosomatids
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Q33411083Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs
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