Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo.

scientific article published in January 2016

Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/978-1-4939-6433-8_7
P698PubMed publication ID27665595

P50authorPascale RombyQ33122290
Stefano MarziQ47974379
Zongfu WuQ64667745
P2093author name stringPierre Fechter
Olivier Fuchsbauer
Delphine Parmentier
P2860cites workMfold web server for nucleic acid folding and hybridization predictionQ24498105
Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knotsQ24530528
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)Q24596281
RNAstructure: software for RNA secondary structure prediction and analysisQ24602642
CRISPR-based adaptive immune systemsQ24609425
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programmingQ24611355
CyloFold: secondary structure prediction including pseudoknotsQ24621690
A pH-responsive riboregulatorQ24654043
DMS footprinting of structured RNAs and RNA-protein complexesQ24657868
Structured mRNAs regulate translation initiation by binding to the platform of the ribosomeQ27648434
CONTRAfold: RNA secondary structure prediction without physics-based modelsQ28254581
The T box mechanism: tRNA as a regulatory moleculeQ28265478
A rough guide to the non-coding RNA world of SalmonellaQ28300754
The building blocks and motifs of RNA architectureQ29031588
Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolutionQ29617336
Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structureQ30990184
Translational control of bacterial heat shock and virulence genes by temperature-sensing mRNAsQ34020569
Magnesium-sensing riboswitches in bacteriaQ34020641
The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA.Q34021136
ProbKnot: fast prediction of RNA secondary structure including pseudoknotsQ34135131
Lead(II) as a probe for investigating RNA structure in vivoQ34364384
Bacterial antisense RNAs: how many are there, and what are they doing?Q34537427
The structural and functional diversity of metabolite-binding riboswitchesQ34965135
ModeRNA: a tool for comparative modeling of RNA 3D structureQ35017843
A primer extension assay for modification of guanine by Ni(II) complexesQ35019257
Defining the binding site of Xenopus transcription factor IIIA on 5S RNA using truncated and chimeric 5S RNA moleculesQ36122661
Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolutionQ37108809
Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNAQ37246131
RNA-mediated regulation in bacteria: from natural to artificial systemsQ37704697
RNA folding in living cellsQ37806517
New insights into riboswitch regulation mechanismsQ37863212
Multiple metal-binding cores are required for metalloregulation by M-box riboswitch RNAsQ38352124
General plasmids for producing RNA in vitro transcripts with homogeneous endsQ39808911
Mono Q chromatography permits recycling of DNA template and purification of RNA transcripts after T7 RNA polymerase reactionQ40504025
RNA folding pathways and the self-assembly of ribosomesQ41615458
Directed hydroxyl radical probing using iron(II) tethered to RNA.Q41746443
Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II).Q43805955
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Sequence-based identification of 3D structural modules in RNA with RMDetectQ48058403
RNA Folding During Transcription: Protocols and StudiesQ54777187
[22] Time-resolved synchrotron X-ray footprinting and its application to RNA foldingQ57260340
P407language of work or nameEnglishQ1860
P1104number of pages21
P304page(s)83-103
P577publication date2016-01-01
P1433published inMethods in Molecular BiologyQ15752859
P1476titleTraditional Chemical Mapping of RNA Structure In Vitro and In Vivo
P478volume1490

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Q90029296RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvationcites workP2860

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