Discovery of novel chemotypes to a G-protein-coupled receptor through ligand-steered homology modeling and structure-based virtual screening.

scientific article published on 17 January 2008

Discovery of novel chemotypes to a G-protein-coupled receptor through ligand-steered homology modeling and structure-based virtual screening. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1021/JM070759M
P698PubMed publication ID18198821
P5875ResearchGate publication ID5652401

P50authorFrederick MonsmaQ56885210
Claudio N. CavasottoQ54867248
P2093author name stringRuben A Abagyan
Johannes H Voigt
Marvin L Bayne
Nicholas J Murgolo
Brian E Hawes
Andrew J W Orry
Michael F Czarniecki
Heather Hine
Kim A O'Neill
Marybeth S Burton
Sue Ann Kocsi
P2860cites workMelanin-concentrating hormone is the cognate ligand for the orphan G-protein-coupled receptor SLC-1Q22010429
Molecular characterization of the melanin-concentrating-hormone receptorQ22010430
Virtual screening using protein-ligand docking: avoiding artificial enrichmentQ53639582
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectG protein-coupled receptorQ38173
protein structureQ735188
chemotypeQ2212766
P304page(s)581-588
P577publication date2008-01-17
P1433published inJournal of Medicinal ChemistryQ900316
P1476titleDiscovery of novel chemotypes to a G-protein-coupled receptor through ligand-steered homology modeling and structure-based virtual screening
P478volume51

Reverse relations

cites work (P2860)
Q356858282,3-Dihydro-1-benzofuran derivatives as a series of potent selective cannabinoid receptor 2 agonists: design, synthesis, and binding mode prediction through ligand-steered modeling.
Q43992927A modeling study for structure features of β-N-acetyl-D-hexosaminidase from Ostrinia furnacalis and its novel inhibitor allosamidin: species selectivity and multi-target characteristics
Q38089182A perspective on more effective GPCR-targeted drug discovery efforts.
Q34402706ALiBERO: Evolving a Team of Complementary Pocket Conformations Rather than a Single Leader
Q28082537Advancements in therapeutically targeting orphan GPCRs
Q30369189Allosteric ligands for the pharmacologically dark receptors GPR68 and GPR65.
Q28256939Automated docking screens: a feasibility study
Q35752199Biased signaling: potential agonist and antagonist of PAR2.
Q37810288Cellular models for the study of the pharmacology and signaling of melanin-concentrating hormone receptors
Q24633082Crystal structure-based virtual screening for fragment-like ligands of the human histamine H(1) receptor
Q34647300Development of 7TM receptor-ligand complex models using ligand-biased, semi-empirical helix-bundle repacking in torsion space: application to the agonist interaction of the human dopamine D2 receptor
Q30396236Discovery of Mycobacterium tuberculosis InhA Inhibitors by Binding Sites Comparison and Ligands Prediction
Q33730325Docking Methods for Structure-Based Library Design
Q37592631Docking and chemoinformatic screens for new ligands and targets
Q36098710Docking and scoring with ICM: the benchmarking results and strategies for improvement
Q30380679Docking screens: right for the right reasons?
Q34561020Docking-based virtual screening for ligands of G protein-coupled receptors: not only crystal structures but also in silico models.
Q38976083Expanding the horizons of G protein-coupled receptor structure-based ligand discovery and optimization using homology models.
Q34670175Fighting Obesity with a Sugar-Based Library: Discovery of Novel MCH-1R Antagonists by a New Computational–VAST Approach for Exploration of GPCR Binding Sites
Q34153589From laptop to benchtop to bedside: structure-based drug design on protein targets.
Q47750928Function and structure-based screening of compounds, peptides and proteins to identify drug candidates.
Q33926350Functionalized congener approach to the design of ligands for G protein-coupled receptors (GPCRs).
Q30437388GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex
Q37182100Galaxy7TM: flexible GPCR-ligand docking by structure refinement
Q38088365High-throughput and in silico screenings in drug discovery.
Q30424335Homology modeling a fast tool for drug discovery: current perspectives
Q35967081Homology modeling of class a G protein-coupled receptors
Q36094653Identification of Novel Smoothened Ligands Using Structure-Based Docking
Q41583442Identification of a Novel Class of BRD4 Inhibitors by Computational Screening and Binding Simulations.
Q33400428Identifying conformational changes of the beta(2) adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators
Q43161102Improved model of lanosterol 14alpha-demethylase by ligand-supported homology modeling: validation by virtual screening and azole optimization
Q50963746Integrating Pharmacophore into Membrane Molecular Dynamics Simulations to Improve Homology Modeling of G Protein-coupled Receptors with Ligand Selectivity: A2A Adenosine Receptor as an Example
Q34978520Isoform selectivity of adenylyl cyclase inhibitors: characterization of known and novel compounds
Q42009373Large multiple transmembrane domain fragments of a G protein-coupled receptor: biosynthesis, purification, and biophysical studies
Q34100662Ligand and Decoy Sets for Docking to G Protein-Coupled Receptors
Q33636089Ligand and structure-based models for the prediction of ligand-receptor affinities and virtual screenings: Development and application to the beta(2)-adrenergic receptor
Q31031038Ligand discovery from a dopamine D3 receptor homology model and crystal structure
Q28533958Ligand pose and orientational sampling in molecular docking
Q33787996Ligand supported homology modeling and docking evaluation of CCR2: docked pose selection by consensus scoring
Q39816632Ligand-Steered Modeling and Docking: A Benchmarking Study in Class A G-Protein-Coupled Receptors
Q36316392Ligand-guided homology modelling of the GABAB2 subunit of the GABAB receptor
Q44789723Ligand-guided optimization of CXCR4 homology models for virtual screening using a multiple chemotype approach.
Q37539924Mastering tricyclic ring systems for desirable functional cannabinoid activity
Q45943415Methods for Virtual Screening of GPCR Targets: Approaches and Challenges.
Q30355473Modelling three-dimensional protein structures for applications in drug design.
Q87407927Molecular Docking Methodologies
Q57176854Molecular Modeling of Drug-Transporter Interactions-An International Transporter Consortium Perspective
Q33751096Molecular modeling and ligand docking for solute carrier (SLC) transporters
Q26991761New Insights for Drug Design from the X-Ray Crystallographic Structures of G-Protein-Coupled Receptors
Q34956263New Insights into the Binding Mode of Melanin Concentrating Hormone Receptor-1 Antagonists: Homology Modeling and Explicit Membrane Molecular Dynamics Simulation Study
Q33718901Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins
Q41842363Novel cGMP efflux inhibitors identified by virtual ligand screening (VLS) and confirmed by experimental studies
Q33463659One-pot, three-component, domino Heck-aza-Michael approach to libraries of functionalized 1,1-dioxido-1,2-benzisothiazoline-3-acetic acids
Q34060024Predicting protein ligand binding motions with the conformation explorer
Q36242719Predicting the Biological Activities Through QSAR Analysis and Docking-Based Scoring
Q56985645Prediction of a Ligand-Binding Niche within a Human Olfactory Receptor by Combining Site-Directed Mutagenesis with Dynamic Homology Modeling
Q51426107Preparation and Refinement of Model Protein–Ligand Complexes
Q34358923Profiling the interaction mechanism of quinoline/quinazoline derivatives as MCHR1 antagonists: an in silico method
Q37880053Progress in structure based drug design for G protein-coupled receptors
Q57175255Recent Trends and Applications of Molecular Modeling in GPCR⁻Ligand Recognition and Structure-Based Drug Design
Q37416441Recent advances in structure-based virtual screening of G-protein coupled receptors
Q55325728Salvianolic acids from antithrombotic Traditional Chinese Medicine Danshen are antagonists of human P2Y1 and P2Y12 receptors.
Q28728561Software and resources for computational medicinal chemistry
Q42863821Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment
Q90692545Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
Q57015852Structure and Modeling of GPCRs: Implications for Drug Discovery
Q34306247Structure based prediction of subtype-selectivity for adenosine receptor antagonists
Q45901542Structure prediction and molecular dynamics simulations of a G-protein coupled receptor: human CCR2 receptor.
Q35229337Structure-based discovery of prescription drugs that interact with the norepinephrine transporter, NET.
Q35887252Structure-based ligand discovery for the protein–protein interface of chemokine receptor CXCR4
Q56991997Structure‐Based Discovery of Allosteric Modulators of Two Related Class B G‐Protein‐Coupled Receptors
Q94589436Study of combining virtual screening and antiviral treatments of the Sars-CoV-2 (Covid-19)
Q30382761Template-based protein modeling: recent methodological advances.
Q36351644The BigLEN-GPR171 Peptide Receptor System Within the Basolateral Amygdala Regulates Anxiety-Like Behavior and Contextual Fear Conditioning
Q84603072The Family of G Protein-Coupled Receptors: An Example of Membrane Proteins
Q33683166The GPR139 reference agonists 1a and 7c, and tryptophan and phenylalanine share a common binding site
Q46208929The binding mode of petrosaspongiolide M to the human group IIA phospholipase A(2): exploring the role of covalent and noncovalent interactions in the inhibition process
Q34286648The flexible pocketome engine for structural chemogenomics
Q27687653Understanding functional residues of the cannabinoid CB1.
Q37967933Update 1 of: Computational Modeling Approaches to Structure–Function Analysis of G Protein-Coupled Receptors
Q33599508Virtual ligand screening of the p300/CBP histone acetyltransferase: identification of a selective small molecule inhibitor
Q33367388Virtual screening of GPCRs: an in silico chemogenomics approach

Search more.