HELIQUEST: a web server to screen sequences with specific alpha-helical properties.

scientific article published on 28 July 2008

HELIQUEST: a web server to screen sequences with specific alpha-helical properties. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/GautierDAD08
P356DOI10.1093/BIOINFORMATICS/BTN392
P698PubMed publication ID18662927
P5875ResearchGate publication ID23133533

P50authorBruno AntonnyQ42403020
Guillaume DrinQ60642542
Romain GautierQ61014818
P2093author name stringDominique Douguet
P2860cites workPrediction of amphipathic in-plane membrane anchors in monotopic proteins using a SVM classifierQ27477471
Protein secondary structure prediction based on position-specific scoring matricesQ27860483
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003Q27860747
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomesQ27860838
Membrane recognition by phospholipid-binding domainsQ29614848
A general amphipathic alpha-helical motif for sensing membrane curvature.Q34601480
Asymmetric tethering of flat and curved lipid membranes by a golgin.Q34775388
MPtopo: A database of membrane protein topologyQ36640283
Amphipathic helices as mediators of the membrane interaction of amphitropic proteins, and as modulators of bilayer physical propertiesQ36683725
P433issue18
P407language of work or nameEnglishQ1860
P921main subjectweb serverQ11288
P1104number of pages2
P304page(s)2101-2102
P577publication date2008-07-28
P1433published inBioinformaticsQ4914910
P1476titleHELIQUEST: a web server to screen sequences with specific alpha-helical properties
P478volume24

Reverse relations

cites work (P2860)
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Q47123534Membrane insertion of the BAX core, but not latch domain, drives apoptotic pore formation
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Q47654966Membrane scission driven by the PROPPIN Atg18.
Q30268563Membrane targeting of TIRAP is negatively regulated by phosphorylation in its phosphoinositide-binding motif
Q93131392Membrane-Deformation Ability of ANKHD1 Is Involved in the Early Endosome Enlargement
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Q24301374Molecular basis for SNX-BAR-mediated assembly of distinct endosomal sorting tubules
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Q37248305Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection
Q91964064New Genus Fibralongavirus in Siphoviridae Phages of Staphylococcus pseudintermedius
Q38661134New user-friendly approach to obtain an Eisenberg plot and its use as a practical tool in protein sequence analysis
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Q38674896Outer nuclear membrane protein Kuduk modulates the LINC complex and nuclear envelope architecture.
Q41897398Paracentrin 1, a synthetic antimicrobial peptide from the sea-urchin Paracentrotus lividus, interferes with staphylococcal and Pseudomonas aeruginosa biofilm formation
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Q30316581Parvulin 17-catalyzed Tubulin Polymerization Is Regulated by Calmodulin in a Calcium-dependent Manner.
Q36108116Peptides from American alligator plasma are antimicrobial against multi-drug resistant bacterial pathogens including Acinetobacter baumannii
Q30402841Peroxiredoxins and Redox Signaling in Plants.
Q34317009Phosphorylation of a membrane curvature-sensing motif switches function of the HOPS subunit Vps41 in membrane tethering.
Q96136244Physicochemical-guided design of cathelicidin-derived peptides generates membrane active variants with therapeutic potential
Q40551197Plant-specific 4/1 polypeptide interacts with an endoplasmic reticulum protein related to human BAP31.
Q39251540Polyhydroxyalkanoate-associated phasins as phylogenetically heterogeneous, multipurpose proteins
Q30274640Positively charged residues within the MYO19 MyMOMA domain are essential for proper localization of MYO19 to the mitochondrial outer membrane
Q47710367Potential functions of LEA proteins from the brine shrimp Artemia franciscana - anhydrobiosis meets bioinformatics
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Q24700044Predicting Zika virus structural biology: Challenges and opportunities for intervention
Q97420728Prediction and Characterization of Cationic Arginine-Rich Plant Antimicrobial Peptide SM-985 From Teosinte (Zea mays ssp. mexicana)
Q44653294Prediction of lipid-binding regions in cytoplasmic and extracellular loops of membrane proteins as exemplified by protein translocation membrane proteins.
Q38698606Pro-apoptotic cationic host defense peptides rich in lysine or arginine to reverse drug resistance by disrupting tumor cell membrane
Q47891219Pro-necrotic Activity of Cationic Mastoparan Peptides in Human Glioblastoma Multiforme Cells Via Membranolytic Action.
Q92542864Protein Amphipathic Helix Insertion: A Mechanism to Induce Membrane Fission
Q90926902Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors
Q38849121Quantitative Proteomics Identifies Serum Response Factor Binding Protein 1 as a Host Factor for Hepatitis C Virus Entry
Q90167443Recovirus NS1-2 Has Viroporin Activity That Induces Aberrant Cellular Calcium Signaling To Facilitate Virus Replication
Q24293469Recruitment of arfaptins to the trans-Golgi network by PI(4)P and their involvement in cargo export
Q91963040Regulation of LC3 lipidation by the autophagy-specific class III phosphatidylinositol-3 kinase complex
Q47660518Regulation of TG accumulation and lipid droplet morphology by the novel TLDP1 in Aurantiochytrium limacinum F26-b
Q57929425Removal of a Membrane Anchor Reveals the Opposing Regulatory Functions of Vibrio cholerae Glucose-Specific Enzyme IIA in Biofilms and the Mammalian Intestine
Q45979499Role of tomato BRANCHED1-like genes in the control of shoot branching.
Q107324915SARS-CoV-2 Fusion Peptide has a Greater Membrane Perturbating Effect than SARS-CoV with Highly Specific Dependence on Ca
Q42361550SAXS and stability studies of iron-induced oligomers of bacterial frataxin CyaY.
Q35923335STARD4 Membrane Interactions and Sterol Binding.
Q51263617Searching for protein signatures using a multilevel alphabet.
Q28546018Sequence analysis reveals a conserved extension in the capping enzyme of the alphavirus supergroup, and a homologous domain in nodaviruses
Q33558107Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies
Q42919917SnapShot: membrane curvature sensors and generators.
Q43152603Solution NMR studies reveal the location of the second transmembrane domain of the human sigma-1 receptor.
Q47676861Sorting of SEC translocase SCY components to different membranes in chloroplasts.
Q59351339Species-Specific Functional Regions of the Green Alga Gamete Fusion Protein HAP2 Revealed by Structural Studies
Q41892236Specific residues of a conserved domain in the N terminus of the human cytomegalovirus pUL50 protein determine its intranuclear interaction with pUL53.
Q27680683Structural Basis for Autoinhibition of CTP:Phosphocholine Cytidylyltransferase (CCT), the Regulatory Enzyme in Phosphatidylcholine Synthesis, by Its Membrane-binding Amphipathic Helix
Q30379169Structural and Functional Insights into the Cryoprotection of Membranes by the Intrinsically Disordered Dehydrins
Q57171219Structural and biological features of a novel plant defensin from Brugmansia x candida
Q58115990Structural consequences of hereditary spastic paraplegia disease-related mutations in kinesin
Q90053454Structural features of the interaction of MapZ with FtsZ and membranes in Streptococcus pneumoniae
Q49309273Structural properties of apolipoprotein A-I mimetic peptides that promote ABCA1-dependent cholesterol efflux.
Q27678479Structure and function of an insect  -carboxylesterase ( Esterase7) associated with insecticide resistance
Q39719231Structure of the N-terminal domain of the metalloprotease PrtV from Vibrio cholerae
Q34962822Structure, antimicrobial activities and mode of interaction with membranes of novel [corrected] phylloseptins from the painted-belly leaf frog, Phyllomedusa sauvagii
Q42558511Structure-activity analysis of the dermcidin-derived peptide DCD-1L, an anionic antimicrobial peptide present in human sweat
Q46016988Structure-function relationship of antimicrobial peptide cathelicidin Pc-CATH1.
Q59790444Structure-function-guided exploration of the antimicrobial peptide polybia-CP identifies activity determinants and generates synthetic therapeutic candidates
Q48121843Synthesis and biological evaluation of novel peptides based on antimicrobial peptides as potential agents with antitumor and multidrug resistance-reversing activities.
Q46833159Taxonomically restricted genes of Craterostigma plantagineum are modulated in their expression during dehydration and rehydration.
Q92266116Temporin L and aurein 2.5 have identical conformations but subtly distinct membrane and antibacterial activities
Q91656339Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1
Q43740919The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity
Q42126568The Design and Construction of K11: A Novel α-Helical Antimicrobial Peptide
Q98205060The Human LL-37(17-29) antimicrobial peptide reveals a functional supramolecular structure
Q64915206The Many Faces of Amphipathic Helices.
Q38293342The SMART model: Soft Membranes Adapt and Respond, also Transiently, in the presence of antimicrobial peptides
Q40052441The Synergistic Antimicrobial Effects of Novel Bombinin and Bombinin H Peptides from the Skin Secretion of  Bombina orientalis.
Q50214791The antimicrobial potential of a new derivative of cathelicidin from Bungarus fasciatus against methicillin-resistant Staphylococcus aureus.
Q92906324The carboxyl-terminal sequence of bim enables bax activation and killing of unprimed cells
Q64093697The dense granule protein TgGRA3 interacts with host Golgi and dysregulates anterograde transport
Q48013887The dense-core vesicle maturation protein CCCP-1 binds RAB-2 and membranes through its C-terminal domain
Q52584729The heptad repeat domain 1 of Mitofusin has membrane destabilization function in mitochondrial fusion.
Q104064637The intracellular lipid-binding domain of human Na+/H+ exchanger 1 forms a lipid-protein co-structure essential for activity
Q42209317The lysine-rich motif of intrinsically disordered stress protein CDeT11-24 from Craterostigma plantagineum is responsible for phosphatidic acid binding and protection of enzymes from damaging effects caused by desiccation
Q57874015The molecular recognition of phosphatidic acid by an amphipathic helix in Opi1
Q92432996The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation
Q54377424The prediction of novel multiple lipid-binding regions in protein translocation motor proteins: a possible general feature.
Q54841644The role and significance of potential lipid-binding regions in the mitochondrial protein import motor: an in-depth in silico study.
Q27310026The seipin complex Fld1/Ldb16 stabilizes ER-lipid droplet contact sites
Q48292182The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress
Q55283773Therapeutic Potential of a Scorpion Venom-Derived Antimicrobial Peptide and Its Homologs Against Antibiotic-Resistant Gram-Positive Bacteria.
Q89518805Three members of the yeast N-BAR proteins family form heterogeneous lattices in vivo and interact differentially with two RabGAP proteins
Q48031478Tools for Designing Amphipathic Helical Antimicrobial Peptides
Q42066550Toward the functional oligomerization state of tryptophan-rich sensory proteins
Q34045689Transport of preproteins by the accessory Sec system requires a specific domain adjacent to the signal peptide
Q98245626Triacylglycerols sequester monotopic membrane proteins to lipid droplets
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