Conservation and Variation in Strategies for DNA Replication of Kinetoplastid Nuclear Genomes.

scientific article published in February 2018

Conservation and Variation in Strategies for DNA Replication of Kinetoplastid Nuclear Genomes. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.2174/1389202918666170815144627
P932PMC publication ID5814967
P698PubMed publication ID29491738

P2093author name stringRichard McCulloch
Catarina A Marques
P2860cites workThe genome of the kinetoplastid parasite, Leishmania majorQ22065797
The Genome of the African Trypanosome Trypanosoma bruceiQ22065798
The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas DiseaseQ22065799
Regulation of replication licensing by acetyltransferase Hbo1.Q24537658
Interactions between BRCA2 and RAD51 for promoting homologous recombination in Leishmania infantumQ24622502
ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA.Q24633457
Mechanisms for initiating cellular DNA replicationQ26827264
Peaks cloaked in the mist: the landscape of mammalian replication originsQ26829115
Deciphering the evolutionary history of open and closed mitosisQ27014064
Structural analysis of human Orc6 protein reveals a homology with transcription factor TFIIBQ27667555
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier–Gorlin syndromeQ27677935
Break-induced replication requires all essential DNA replication factors except those specific for pre-RC assembly.Q27930164
How MCM loading and spreading specify eukaryotic DNA replication initiation sitesQ28066336
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complexQ28241786
Protein-RNA interactions: new genomic technologies and perspectivesQ28257664
HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by GemininQ28272275
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactionsQ28279406
The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencingQ28291160
Formation of linear amplicons with inverted duplications in Leishmania requires the MRE11 nucleaseQ28542480
Transcription initiation activity sets replication origin efficiency in mammalian cellsQ28754949
Evolutionary history and higher order classification of AAA+ ATPasesQ29615260
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
Comparative genomics of trypanosomatid parasitic protozoaQ29617953
RNA sequencing: advances, challenges and opportunitiesQ29619605
Charting histone modifications and the functional organization of mammalian genomesQ29620707
Archaeal DNA replication.Q30368911
Chromosome structure: DNA nucleotide sequence elements of a subset of the minichromosomes of the protozoan Trypanosoma bruceiQ30450327
A cytokinetic function of Drosophila ORC6 protein resides in a domain distinct from its replication activityQ30968824
Trypanosome outer kinetochore proteins suggest conservation of chromosome segregation machinery across eukaryotes.Q31152005
Conserved linkage groups associated with large-scale chromosomal rearrangements between Old World and New World Leishmania genomesQ31976283
G-Quadruplexes in DNA Replication: A Problem or a Necessity?Q38963148
Does DNA replication direct locus-specific recombination during host immune evasion by antigenic variation in the African trypanosome?Q39002369
Nuclear DNA replication and repair in parasites of the genus Leishmania: Exploiting differences to develop innovative therapeutic approachesQ39037726
Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi.Q39315224
Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.Q39321886
The Leishmania genome comprises 36 chromosomes conserved across widely divergent human pathogenic speciesQ39716216
Divergent polo box domains underpin the unique kinetoplastid kinetochoreQ39879158
ATPase-dependent quality control of DNA replication origin licensingQ39989632
Mechanism of Archaeal MCM Helicase Recruitment to DNA Replication OriginsQ40150794
The chromatin environment shapes DNA replication origin organization and defines origin classesQ40330362
Genome-wide mapping reveals single-origin chromosome replication in Leishmania, a eukaryotic microbe.Q40945987
Structure of the active form of human origin recognition complex and its ATPase motor moduleQ41599238
Coordination of replication and transcription along a Drosophila chromosome.Q41711507
Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.Q41868711
The dynamics of genome replication using deep sequencing.Q42090523
Accelerated growth in the absence of DNA replication originsQ42258104
Trypanosoma brucei Orc1 is essential for nuclear DNA replication and affects both VSG silencing and VSG switching.Q42283703
New insights into replication origin characteristics in metazoansQ42559394
Conservation of replication timing reveals global and local regulation of replication origin activityQ42573426
Trypanosome prereplication machinery contains a single functional orc1/cdc6 protein, which is typical of archaeaQ42576404
Initiation of DNA replication at CpG islands in mammalian chromosomesQ42643271
Dynamic changes in histone acetylation regulate origins of DNA replicationQ42700642
Trypanosome prereplication machinery: a potential new target for an old problem.Q42752722
Ribosome profiling: new views of translation, from single codons to genome scaleQ44759418
A highly basic sequence at the N-terminal region is essential for targeting the DNA replication protein ORC1 to the nucleus in Leishmania donovaniQ45326238
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex.Q46030233
Transcriptionally Driven DNA Replication Program of the Human Parasite Leishmania majorQ47287334
Replication timing of genes and middle repetitive sequences.Q51233045
Expression and subcellular localization of ORC1 in Leishmania major.Q53462170
An ARS element inhibits DNA replication through a SIR2-dependent mechanism.Q53480696
Yeast origin recognition complex functions in transcription silencing and DNA replicationQ61942289
A telomere-mediated chromosome fragmentation approach to assess mitotic stability and ploidy alterations of Leishmania chromosomesQ73384471
Studies with artificial extrachromosomal elements in trypanosomatids: could specificity in the initiation of DNA replication be linked to that in transcription?Q80381253
Leishmania DNA Replication Timing: A Stochastic Event?Q89354406
Sequencing newly replicated DNA reveals widespread plasticity in human replication timingQ33591861
Expanded roles of the origin recognition complex in the architecture and function of silenced chromatin in Saccharomyces cerevisiaeQ33613997
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loadingQ33618928
Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencingQ33854091
Break-induced DNA replicationQ34037586
Principles and challenges of genomewide DNA methylation analysisQ34096366
Eukaryotic DNA replication origins: many choices for appropriate answersQ34139588
Orc6 involved in DNA replication, chromosome segregation, and cytokinesis.Q34143699
The cell cycle of Leishmania: morphogenetic events and their implications for parasite biologyQ34160173
Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptomeQ34180921
Identification of ORC1/CDC6-interacting factors in Trypanosoma brucei reveals critical features of origin recognition complex architectureQ34193312
Evaluating genome-scale approaches to eukaryotic DNA replicationQ34232735
Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombeQ34250460
Evolutionary diversification of eukaryotic DNA replication machinery.Q34392328
Replication stress and cancerQ34473453
Coming of age: ten years of next-generation sequencing technologiesQ34526801
DNA replication timingQ34654036
Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marksQ34814221
Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zoneQ34865206
Motors and switches: AAA+ machines within the replisome.Q34988324
The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooksQ35058094
The BAH domain facilitates the ability of human Orc1 protein to activate replication origins in vivoQ35131006
The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cellsQ35160747
Single molecule analysis of Trypanosoma brucei DNA replication dynamicsQ35171539
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved featuresQ35195952
Crystal structure of the eukaryotic origin recognition complexQ35202495
The Cdc45·Mcm2-7·GINS protein complex in trypanosomes regulates DNA replication and interacts with two Orc1-like proteins in the origin recognition complex.Q35213348
Different nucleosomal architectures at early and late replicating origins in Saccharomyces cerevisiae.Q35251268
Genome evolution in trypanosomatid parasitesQ35550761
Chromosome and gene copy number variation allow major structural change between species and strains of LeishmaniaQ35581571
Multiple Cdt1 molecules act at each origin to load replication-competent Mcm2-7 helicasesQ35626395
Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopyQ35823597
25 years of African trypanosome research: From description to molecular dissection and new drug discoveryQ35875131
High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan originsQ36035868
Chromosomal Translocations in the Parasite Leishmania by a MRE11/RAD50-Independent Microhomology-Mediated End Joining MechanismQ36055419
The positioning and dynamics of origins of replication in the budding yeast nucleus.Q36381904
Replication landscape of the human genomeQ36511235
Single-molecule analysis of DNA replication reveals novel features in the divergent eukaryotes Leishmania and Trypanosoma brucei versus mammalian cellsQ36686405
Genome-wide analysis reveals extensive functional interaction between DNA replication initiation and transcription in the genome of Trypanosoma brucei.Q36713460
Quantitative, genome-wide analysis of eukaryotic replication initiation and terminationQ36771862
Principles and concepts of DNA replication in bacteria, archaea, and eukaryaQ36938523
Genome-wide studies highlight indirect links between human replication origins and gene regulation.Q36948921
Diverged composition and regulation of the Trypanosoma brucei origin recognition complex that mediates DNA replication initiationQ36959024
Mapping replication dynamics in Trypanosoma brucei reveals a link with telomere transcription and antigenic variation.Q37098846
DNA replication origins.Q37197487
The origin recognition complex protein familyQ37213779
A Meier-Gorlin syndrome mutation in a conserved C-terminal helix of Orc6 impedes origin recognition complex formationQ37217690
DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA bindingQ37259735
The emerging role of RNA-binding proteins in the life cycle of Trypanosoma bruceiQ37682671
DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity.Q37687102
Discovery of unconventional kinetochores in kinetoplastids.Q37690124
G4 motifs affect origin positioning and efficiency in two vertebrate replicatorsQ37723984
Eukaryotic chromosome DNA replication: where, when, and how?Q37725931
Nuclear architecture, genome and chromatin organisation in Trypanosoma bruceiQ37851644
Gene expression regulation in trypanosomatidsQ37948933
On the opportunistic nature of transcription and replication initiation in the metazoan genomeQ37956564
Adaptive mechanisms in pathogens: universal aneuploidy in LeishmaniaQ38025763
Dormant origins, the licensing checkpoint, and the response to replicative stressesQ38035836
Relationship between DNA replication and the nuclear matrix.Q38058379
Regulating DNA replication in bacteriaQ38087526
Transcription-replication encounters, consequences and genomic instabilityQ38095707
Cell cycle control across the eukaryotic kingdomQ38097151
Regulating DNA replication in eukaryaQ38120365
Antigenic variation in African trypanosomes: the importance of chromosomal and nuclear context in VSG expression controlQ38139125
Nuclear DNA replication initiation in kinetoplastid parasites: new insights into an ancient process.Q38167180
High-resolution digital profiling of the epigenomeQ38258264
DNA replication origin activation in space and timeQ38496732
Programmed Genome Rearrangements in TetrahymenaQ38535927
P433issue2
P304page(s)98-109
P577publication date2018-02-01
P1433published inCurrent GenomicsQ5195047
P1476titleConservation and Variation in Strategies for DNA Replication of Kinetoplastid Nuclear Genomes.
P478volume19