Motors and switches: AAA+ machines within the replisome.

scientific article

Motors and switches: AAA+ machines within the replisome. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1041736319
P356DOI10.1038/NRM949
P8608Fatcat IDrelease_t7gtirphrbha7eld7qszottaey
P698PubMed publication ID12415300
P5875ResearchGate publication ID11050692

P50authorMichael O'DonnellQ57321345
P2093author name stringDavid Jeruzalmi
John Kuriyan
Megan J Davey
P2860cites workA DNA helicase activity is associated with an MCM4, -6, and -7 protein complexQ24313590
Reconstitution of recombinant human replication factor C (RFC) and identification of an RFC subcomplex possessing DNA-dependent ATPase activityQ24314915
Homology in accessory proteins of replicative polymerases--E. coli to humansQ24597606
In vitro reconstitution of human replication factor C from its five subunitsQ24612549
Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosusQ24644860
NSF N-terminal domain crystal structure: models of NSF functionQ27619352
Crystal structure of the DNA polymerase processivity factor of T4 bacteriophageQ27621584
Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint controlQ27627450
Structure of the AAA ATPase p97Q27629334
Crystal structure of the hexameric replicative helicase RepA of plasmid RSF1010Q27629602
Structure and mechanism of the RuvB Holliday junction branch migration motorQ27633740
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase IIIQ27634545
Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase IIIQ27634553
Atomic structure of the clamp loader small subunit from Pyrococcus furiosusQ27634751
The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiationQ27639653
Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clampQ27642098
Structure of the recA protein–ADP complexQ27643870
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNAQ27730804
Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNAQ27733704
Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase IIIQ27747193
Crystal structure of the hexamerization domain of N-ethylmaleimide-sensitive fusion proteinQ27765268
Uninterrupted MCM2-7 function required for DNA replication fork progressionQ27929772
Identification of replication factor C from Saccharomyces cerevisiae: a component of the leading-strand DNA replication complexQ27929854
Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phaseQ27930849
An essential role for the Cdc6 protein in forming the pre-replicative complexes of budding yeastQ27931174
Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complexQ27931631
Characterization of the Five Replication Factor C Genes of Saccharomyces cerevisiaeQ27933916
Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeastQ27936236
XCDT1 is required for the assembly of pre-replicative complexes in Xenopus laevisQ28141884
The Cdt1 protein is required to license DNA for replication in fission yeastQ28141890
Assembly of the human origin recognition complexQ28185696
Interactions between two catalytically distinct MCM subgroups are essential for coordinated ATP hydrolysis and DNA replicationQ28210357
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complexQ28241786
A complex consisting of human replication factor C p40, p37, and p36 subunits is a DNA-dependent ATPase and an intermediate in the assembly of the holoenzymeQ28244105
A globular complex formation by Nda1 and the other five members of the MCM protein family in fission yeastQ28254368
Deletion analysis of the large subunit p140 in human replication factor C reveals regions required for complex formation and replication activitiesQ28307105
Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNAQ28360242
Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of RasQ28646214
DnaC protein contains a modified ATP-binding motif and belongs to a novel family of ATPases including also DnaA.Q30838822
Clamp loaders and sliding clampsQ31048743
Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assemblyQ33888734
ATPase switches controlling DNA replication initiation.Q33912857
Mechanisms of DNA replication.Q34046401
DnaX complex of Escherichia coli DNA polymerase III holoenzyme. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' to a physiologically relevant rangeQ34057692
Polymerases and the replisome: machines within machines.Q34065994
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coliQ34085669
The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites.Q34245423
Properties of the human nuclear protein p85Mcm. Expression, nuclear localization and interaction with other Mcm proteinsQ34379726
Identification of regions within the four small subunits of human replication factor C required for complex formation and DNA replicationQ34420791
Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC.Q34446488
Regulation of origin recognition complex conformation and ATPase activity: differential effects of single-stranded and double-stranded DNA bindingQ34488663
A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'.Q34681537
Interaction of Escherichia coli dnaB and dnaC(D) gene products in vitroQ35072388
ATP-dependent structural change of the eukaryotic clamp-loader protein, replication factor C.Q35835905
CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replicationQ36565060
The single minichromosome maintenance protein of Methanobacterium thermoautotrophicum DeltaH contains DNA helicase activityQ36774428
A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicaseQ37107587
Isolation and characterization of various complexes of the minichromosome maintenance proteins of Schizosaccharomyces pombeQ38313205
ATP- and ADP-dnaA protein, a molecular switch in gene regulation.Q38318935
ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzymeQ38333538
Escherichia coli DNA polymerase III tau- and gamma-subunit conserved residues required for activity in vivo and in vitroQ39501095
Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosusQ39503422
The DnaC helicase loader is a dual ATP/ADP switch proteinQ39647456
From footprint to toeprint: a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA.Q39720849
The structure of the initiation complex at the replication origin, oriC, of Escherichia coliQ40412850
The intrinsic DNA helicase activity of Methanobacterium thermoautotrophicum delta H minichromosome maintenance proteinQ40889586
The internal workings of a DNA polymerase clamp-loading machineQ42213856
The RLF-M component of the replication licensing system forms complexes containing all six MCM/P1 polypeptidesQ42620704
Mechanism of beta clamp opening by the delta subunit of Escherichia coli DNA polymerase III holoenzyme.Q42646239
Stoichiometry of DnaA and DnaB protein in initiation at the Escherichia coli chromosomal originQ43734040
Interplay of clamp loader subunits in opening the beta sliding clamp of Escherichia coli DNA polymerase III holoenzymeQ43747964
Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosomeQ44347022
Assembly of a chromosomal replication machine: two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. II. Intermediate complex between the clamp loader and its clampQ47352298
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.Q47802858
The fission yeast cdc18+ gene product couples S phase to START and mitosisQ48109834
Sites of dnaA protein-binding in the replication origin of the Escherichia coli K-12 chromosomeQ48376389
tau couples the leading- and lagging-strand polymerases at the Escherichia coli DNA replication forkQ71246451
ORC and Cdc6p interact and determine the frequency of initiation of DNA replication in the genomeQ72295197
Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an originQ73151265
A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum deltaHQ73509910
Biochemical characterization of a clamp-loader complex homologous to eukaryotic replication factor C from the hyperthermophilic archaeon Sulfolobus solfataricusQ74112878
A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coliQ74214291
Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymeraseQ78170535
DnaX complex of Escherichia coli DNA polymerase III holoenzyme. Physical characterization of the DnaX subunits and complexesQ95802252
P433issue11
P304page(s)826-835
P577publication date2002-11-01
P1433published inNature Reviews Molecular Cell BiologyQ1573120
P1476titleMotors and switches: AAA+ machines within the replisome
P478volume3

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cites work (P2860)
Q27652854A Structural Basis for the Regulatory Inactivation of DnaA
Q54479843A fork-clearing role for UvrD.
Q42261115A novel function for the conserved glutamate residue in the walker B motif of replication factor C.
Q27653990A novel zinc-binding fold in the helicase interaction domain of the Bacillus subtilis DnaI helicase loader
Q34596596A structural role for ATP in the formation and stability of the human origin recognition complex
Q29617410AAA+ proteins: have engine, will work
Q24311843An assembly chaperone collaborates with the SMN complex to generate spliceosomal SnRNPs
Q27659293Analysis of the role of PCNA-DNA contacts during clamp loading
Q34532849Archaea: an archetype for replication initiation studies?
Q35791501Architecture and conservation of the bacterial DNA replication machinery, an underexploited drug target
Q53723982Biochemical and mutational analyses of a unique clamp loader complex in the archaeon Methanosarcina acetivorans.
Q40068469Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon Methanothermobacter thermoautotrophicus
Q24540300Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding
Q28259261CDC6: from DNA replication to cell cycle checkpoints and oncogenesis
Q36881426Cell cycle regulation of DNA replication.
Q39359862Chaperoning of a replicative polymerase onto a newly assembled DNA-bound sliding clamp by the clamp loader
Q52371324Conservation and Variation in Strategies for DNA Replication of Kinetoplastid Nuclear Genomes.
Q39109267Control of Genome Integrity by RFC Complexes; Conductors of PCNA Loading onto and Unloading from Chromatin during DNA Replication
Q27677366Crystal Structure and Mode of Helicase Binding of the C-Terminal Domain of Primase from Helicobacter pylori
Q33557911DNA flap creation by the RarA/MgsA protein of Escherichia coli
Q36101749DNA replication and progression through S phase
Q22121971DNA replication at the single-molecule level
Q37259735DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding
Q34234552Depletion of minichromosome maintenance protein 5 in the zebrafish retina causes cell-cycle defect and apoptosis.
Q39893136Dual functions, clamp opening and primer-template recognition, define a key clamp loader subunit.
Q36499592Dynamics of loading the Escherichia coli DNA polymerase processivity clamp
Q36161247ELG1, a regulator of genome stability, has a role in telomere length regulation and in silencing
Q27935364Elg1 forms an alternative PCNA-interacting RFC complex required to maintain genome stability
Q33909111Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp
Q36659540Eukaryotic DNA replication in a chromatin context
Q35684975Eukaryotic MCM proteins: beyond replication initiation
Q39808461Evolutionary clues to DNA polymerase III beta clamp structural mechanisms
Q46497050Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.
Q39661726Functional characterization of the RuvB homologs from Mycoplasma pneumoniae and Mycoplasma genitalium.
Q46440751Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states
Q28066287Fundamental Characteristics of AAA+ Protein Family Structure and Function
Q43154603Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis.
Q39115514Hypothesis: bacterial clamp loader ATPase activation through DNA-dependent repositioning of the catalytic base and of a trans-acting catalytic threonine
Q43015889Identification of replication origins in the genome of the methanogenic archaeon, Methanocaldococcus jannaschii
Q36667881Insights into head-tailed viruses infecting extremely halophilic archaea
Q44650487Mechanism of loading the Escherichia coli DNA polymerase III sliding clamp: I. Two distinct activities for individual ATP sites in the gamma complex.
Q44650489Mechanism of loading the Escherichia coli DNA polymerase III sliding clamp: II. Uncoupling the beta and DNA binding activities of the gamma complex
Q47706604Mechanism of opening a sliding clamp
Q73086540Mechanism of the E. coli tau processivity switch during lagging-strand synthesis
Q35697547Minimal protein-folding systems in hyperthermophilic archaea
Q42684871Modeling of possible subunit arrangements in the eukaryotic chaperonin TRiC.
Q41874528Modular organization of a Cdc6-like protein from the crenarchaeon Sulfolobus solfataricus
Q37481416Molecular analyses of a three-subunit euryarchaeal clamp loader complex from Methanosarcina acetivorans
Q36159368Molecular dissection of the roles of nucleotide binding and hydrolysis in dynein's AAA domains in Saccharomyces cerevisiae
Q37473805Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor
Q38288654Multiple ATP binding is required to stabilize the "activated" (clamp open) clamp loader of the T4 DNA replication complex
Q36668007Mutational analysis reveals Escherichia coli oriC interacts with both DnaA-ATP and DnaA-ADP during pre-RC assembly
Q46030233Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex.
Q28304946Origin recognition and the chromosome cycle
Q28357054Primase is required for helicase activity and helicase alters the specificity of primase in the enteropathogen Clostridium difficile
Q33756104Processivity factor of DNA polymerase and its expanding role in normal and translesion DNA synthesis
Q45195721Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex
Q36445573Proteomic dissection of DNA polymerization
Q35310439Remodeling of nucleoprotein complexes is independent of the nucleotide state of a mutant AAA+ protein.
Q36932854Replication clamps and clamp loaders.
Q44608896Replication factor C clamp loader subunit arrangement within the circular pentamer and its attachment points to proliferating cell nuclear antigen.
Q34209486Replication initiation at the Escherichia coli chromosomal origin
Q33940331Replication termination in Escherichia coli: structure and antihelicase activity of the Tus-Ter complex
Q38751208Review: The lord of the rings: Structure and mechanism of the sliding clamp loader
Q35904074Sculpting the proteome with AAA(+) proteases and disassembly machines.
Q35203594Selective inhibition of DNA replicase assembly by a non-natural nucleotide: exploiting the structural diversity of ATP-binding sites
Q37092544Single particle EM studies of the Drosophila melanogaster origin recognition complex and evidence for DNA wrapping
Q34978255Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA.
Q27655690Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii
Q27652911Structural Synergy and Molecular Crosstalk between Bacterial Helicase Loaders and Replication Initiators
Q34448062Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives
Q37603329Structural biology of MCM helicases
Q27666855Structure and Biochemical Activities of Escherichia coli MgsA
Q27679984Structure of a helicase–helicase loader complex reveals insights into the mechanism of bacterial primosome assembly
Q36314921TcpA, an FtsK/SpoIIIE homolog, is essential for transfer of the conjugative plasmid pCW3 in Clostridium perfringens
Q21128663The AAA+ superfamily of functionally diverse proteins
Q52586858The AAA + ATPase Thorase is neuroprotective against ischemic injury.
Q37608441The ATP sites of AAA+ clamp loaders work together as a switch to assemble clamps on DNA
Q52656083The Macromolecular Machines that Duplicate the Escherichia coli Chromosome as Targets for Drug Discovery.
Q27939471The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication
Q26825605The RFC clamp loader: structure and function
Q37480430The X-ray structure of the papillomavirus helicase in complex with its molecular matchmaker E2.
Q35106880The archaeal cell cycle: current issues
Q36391613The chromosome replication machinery of the archaeon Sulfolobus solfataricus
Q34249678The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA.
Q48100702The maize Oil yellow1 (Oy1) gene encodes the I subunit of magnesium chelatase
Q37213779The origin recognition complex protein family
Q37191498The putative coupling protein TcpA interacts with other pCW3-encoded proteins to form an essential part of the conjugation complex
Q33999249The replication clamp-loading machine at work in the three domains of life
Q37425766The theta subunit of Escherichia coli DNA polymerase III: a role in stabilizing the epsilon proofreading subunit.
Q36526276The β sliding clamp closes around DNA prior to release by the Escherichia coli clamp loader γ complex
Q37332247The β-sliding clamp directs the localization of HdaA to the replisome in Caulobacter crescentus

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