m6ASNP: a tool for annotating genetic variants by m6A function.

scientific article published on 2 April 2018

m6ASNP: a tool for annotating genetic variants by m6A function. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/GIGASCIENCE/GIY035
P932PMC publication ID6007280
P698PubMed publication ID29617790

P50authorYubin XieQ55143479
P2093author name stringLi Chen
Zhixiang Zuo
Jian Ren
Ya Zhang
Shuai Jiang
Yuli Zhao
Yanyan Miao
Zhihao He
Yueyuan Zheng
P2860cites workModel-based analysis of ChIP-Seq (MACS)Q21183902
Genome-wide QTL mapping for three traits related to teat number in a White Duroc x Erhualian pig resource populationQ21261513
ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertilityQ24304362
A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylationQ24311871
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomesQ24534193
The NHGRI GWAS Catalog, a curated resource of SNP-trait associationsQ24568334
The NCBI dbGaP database of genotypes and phenotypesQ24569609
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codonsQ24598126
iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition.Q50567651
FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase.Q51236778
Synonymous Mutations Frequently Act as Driver Mutations in Human CancersQ55554493
Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing EnhancersQ59303878
An open access database of genome-wide association resultsQ95780251
SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived featuresQ36958992
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.Q37227320
Loss-of-function mutation in the dioxygenase-encoding FTO gene causes severe growth retardation and multiple malformationsQ37253402
Identification of deleterious mutations within three human genomesQ37363175
Hypoxia-inducible factors regulate pluripotency factor expression by ZNF217- and ALKBH5-mediated modulation of RNA methylation in breast cancer cellsQ37662078
Understanding the contribution of synonymous mutations to human diseaseQ37924093
Gene expression regulation mediated through reversible m⁶A RNA methylationQ38198852
A novel, de novo mutation in the PRKAG2 gene: infantile-onset phenotype and the signaling pathway involved.Q38760684
Mutation of N-linked glycosylation in EpCAM affected cell adhesion in breast cancer cellsQ38896224
Role of post-transcriptional regulation of mRNA stability in renal pathophysiology: focus on chronic kidney diseaseQ39010143
m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotencyQ39038754
Dynamic RNA Modifications in Gene Expression RegulationQ39378718
MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicingQ40621425
Using combined evidence from replicates to evaluate ChIP-seq peaks.Q40957850
pRNAm-PC: Predicting N(6)-methyladenosine sites in RNA sequences via physical-chemical propertiesQ40989473
What, where, and when: the importance of post-transcriptional regulation in the brainQ41813462
piRNABank: a web resource on classified and clustered Piwi-interacting RNAsQ42150407
Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov modelsQ42288039
A missense mutation in the transmembrane domain of CESA4 affects protein abundance in the plasma membrane and results in abnormal cell wall biosynthesis in riceQ44216135
MIMP: predicting the impact of mutations on kinase-substrate phosphorylation.Q45954450
Nucleotide-specific recognition of iron-responsive elements by iron regulatory protein 1.Q46782145
m6AVar: a database of functional variants involved in m6A modificationQ47159279
The RNA modification landscape in human diseaseQ50266881
Identification of a pathogenic FTO mutation by next-generation sequencing in a newborn with growth retardation and developmental delayQ50351896
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARBQ24685829
Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammalsQ24814018
Recent advances in dynamic m6A RNA modificationQ26744188
A method and server for predicting damaging missense mutationsQ27860835
5' UTR m(6)A Promotes Cap-Independent TranslationQ28114851
Nuclear m(6)A Reader YTHDC1 Regulates mRNA SplicingQ28114974
A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulationQ28267771
Mutations of phosphorylation sites in lamin A that prevent nuclear lamina disassembly in mitosisQ28286361
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cellsQ28585513
RNA-methylation-dependent RNA processing controls the speed of the circadian clockQ28591141
ClinVar: public archive of interpretations of clinically relevant variantsQ28603051
miRBase: annotating high confidence microRNAs using deep sequencing dataQ28660701
Mutation of A677 in histone methyltransferase EZH2 in human B-cell lymphoma promotes hypertrimethylation of histone H3 on lysine 27 (H3K27)Q29147438
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing dataQ29547161
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithmQ29547194
The genetic association databaseQ29617244
The role of the linker between the SH2 domain and catalytic domain in the regulation and function of Src.Q30176292
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq dataQ30705717
BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications.Q31040612
A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq dataQ31108439
PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylationQ33517577
Associations between an obesity related genetic variant (FTO rs9939609) and prostate cancer riskQ33728225
The genetics of obesity: FTO leads the way.Q34005975
Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m⁶A-demethylation of NANOG mRNA.Q34519307
CLIPdb: a CLIP-seq database for protein-RNA interactionsQ35079291
High-resolution N(6) -methyladenosine (m(6) A) map using photo-crosslinking-assisted m(6) A sequencingQ35413587
Structure and thermodynamics of N6-methyladenosine in RNA: a spring-loaded base modificationQ35511241
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptomeQ35804751
How do RNA folding algorithms work?Q35940963
miR-212/132 expression and functions: within and beyond the neuronal compartmentQ36008128
SIFT web server: predicting effects of amino acid substitutions on proteinsQ36088562
DASHR: database of small human noncoding RNAsQ36434778
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomesQ36434994
METTL13 is downregulated in bladder carcinoma and suppresses cell proliferation, migration and invasionQ36499467
Preventing E-cadherin aberrant N-glycosylation at Asn-554 improves its critical function in gastric cancerQ36868502
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue5
P577publication date2018-05-01
P1433published inGigaScienceQ19969338
P1476titlem6ASNP: a tool for annotating genetic variants by m6A function.
P478volume7

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cites work (P2860)
Q97521123Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics
Q64079753DRUM: Inference of Disease-Associated mA RNA Methylation Sites From a Multi-Layer Heterogeneous Network
Q91826392Genome-wide enrichment of m6A-associated single-nucleotide polymorphisms in the lipid loci
Q61451737Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods
Q91881019N6-methyladenosine regulatory machinery in plants: composition, function and evolution
Q90115119Predict Epitranscriptome Targets and Regulatory Functions of N 6-Methyladenosine (m6A) Writers and Erasers
Q98177281Prediction of RNA Methylation Status From Gene Expression Data Using Classification and Regression Methods
Q64076452RNAMethyPro: a biologically conserved signature of N6-methyladenosine regulators for predicting survival at pan-cancer level
Q90404858m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer
Q99630274m6A RNA modification modulates PI3K/Akt/mTOR signal pathway in Gastrointestinal Cancer
Q98771745m6A Reader: Epitranscriptome Target Prediction and Functional Characterization of N 6-Methyladenosine (m6A) Readers

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