ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. (scientific article published on 27 February 2018)

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

Q24605194

The sequence read archive

Q24616329

Reanalysis of the Rituximab in ANCA-Associated Vasculitis trial identifies granulocyte subsets as a novel early marker of successful treatment

Q28607461

RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data

Q30490637

High-resolution temporal response patterns to influenza vaccine reveal a distinct human plasma cell gene signature

Q30541968

ImmPort: disseminating data to the public for the future of immunology

Q30813520

Toward effective sharing of high-dimensional immunology data

Q30841162

Reanalyses of randomized clinical trial data

Q30849007

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

Q30883687

Logical development of the cell ontology

Q33786317

Protein Ontology: a controlled structured network of protein entities

Q34387467

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

Q34524689

NCBI's Database of Genotypes and Phenotypes: dbGaP.

Q35057773

Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses

Q36386754

Thinking outside the gate: single-cell assessments in multiple dimensions

Q36777433

Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses

Q36803269

Statistical inference of a convergent antibody repertoire response to influenza vaccine

Q36965474

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

Q37556803

Molecular signatures of antibody responses derived from a systems biology study of five human vaccines

Q37625332

Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses

Q38607708

Open Access Platforms for Sharing Clinical Trial Data

Q42605759

PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models.

Q45961634

xCell: digitally portraying the tissue cellular heterogeneity landscape

Q46377913

Social network architecture of human immune cells unveiled by quantitative proteomics

Q47967815

P275

Creative Commons Attribution 4.0 International

copyrighted

describes a project that uses

Jupyter notebook file

Q70357595

P433

issue

P407

language of work or name

English

Q1860

P921

main subject

ImmPort

Q57631756

P304

page(s)

180015

P577

publication date

2018-02-27

P1433

published in

Scientific Data

Q27725928

P1476

title

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

P478

volume

Reverse relations

cites work (P2860)

Q90115488	A new immune signature for survival prediction and immune checkpoint molecules in lung adenocarcinoma
Q95279709	A novel proangiogenic B cell subset is increased in cancer and chronic inflammation
Q92247000	A pilot study showing a stronger H1N1 influenza vaccination response during pregnancy in women who subsequently deliver preterm
Q91866912	A structured model for immune exposures
Q92541735	An Immune-Related Signature Predicts Survival in Patients With Lung Adenocarcinoma
Q64119983	Assessment of Postdonation Outcomes in US Living Kidney Donors Using Publicly Available Data Sets
Q64928913	Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies.
Q97905830	Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
Q97519043	Current Challenges in Vaccinology
Q59135002	Elucidating the Interaction of CF Airway Epithelial Cells and Rhinovirus: Using the Host-Pathogen Relationship to Identify Future Therapeutic Strategies
Q58608729	Enabling precision medicine in neonatology, an integrated repository for preterm birth research
Q53840902	High-quality science requires high-quality open data infrastructure.
Q98906726	Identification of 12 immune-related lncRNAs and molecular subtypes for the clear cell renal cell carcinoma based on RNA sequencing data
Q95265722	Identification of Prognostic Immune Genes in Bladder Urothelial Carcinoma
Q99711643	Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Q92972636	Immunomics in Pediatric Rheumatic Diseases
Q91933768	Integrative Approaches to Cancer Immunotherapy
Q92725359	Lossless Compression of Cytometric Data
Q64066398	MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in human cancers
Q91584085	Microarray Gene Expression Dataset Re-analysis Reveals Variability in Influenza Infection and Vaccination
Q99616791	Molecular subtyping of glioblastoma based on immune-related genes for prognosis
Q90248366	Multi-Dimensional Flow Cytometry Analyses Reveal a Dichotomous Role for Nitric Oxide in Melanoma Patients Receiving Immunotherapy
Q89467603	Open Data Revolution in Clinical Research: Opportunities and Challenges
Q56888099	Open data informatics and data repurposing for IBD
Q108126881	Opportunities and Challenges in Democratizing Immunology Datasets
Q99585544	Origins of atrophy in Parkinson linked to early onset and local transcription patterns
Q89818787	Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers
Q92823087	Papillary Thyroid Carcinoma Variants are Characterized by Co-dysregulation of Immune and Cancer Associated Genes
Q64113997	Prototype of running clinical trials in an untrustworthy environment using blockchain
Q91614095	Reporting and connecting cell type names and gating definitions through ontologies
Q97431132	Robust FCS parsing - Exploring 211359 public files
Q62751537	Robust prediction of clinical outcomes using cytometry data.
Q92760509	SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses
Q98735534	Systems Biology Approaches to Understanding the Human Immune System
Q90858285	The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system
Q92579012	The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan-cancer
Q99207839	Three-dimensional facial-image analysis to predict heterogeneity of the human ageing rate and the impact of lifestyle