| scholarly article | Q13442814 |
| P356 | DOI | 10.1038/NG1209 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1038/ng1209 |
| P698 | PubMed publication ID | 12847524 |
| P5875 | ResearchGate publication ID | 10672448 |
| P50 | author | Antoine Danchin | Q2853841 |
| Eduardo Rocha | Q43122750 | ||
| P2860 | cites work | The complete genome sequence of the gram-positive bacterium Bacillus subtilis | Q22122360 |
| The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications | Q24498207 | ||
| Essential Bacillus subtilis genes | Q24681292 | ||
| Consequences of replication fork movement through transcription units in vivo | Q30311901 | ||
| Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media | Q33638195 | ||
| Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes | Q34482960 | ||
| Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? | Q34825812 | ||
| Genetic analysis of protein stability and function | Q38763378 | ||
| High-density microarray-mediated gene expression profiling of Escherichia coli | Q39501950 | ||
| When polymerases collide: replication and the transcriptional organization of the E. coli chromosome | Q39641681 | ||
| Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex | Q46865543 | ||
| Rearrangement of the bacterial chromosome: forbidden inversions. | Q50197324 | ||
| Characterization and properties of very large inversions of the E. coli chromosome along the origin-to-terminus axis | Q69926359 | ||
| DNA replication fork pause sites dependent on transcription | Q71096003 | ||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | bias | Q742736 |
| P304 | page(s) | 377-378 | |
| P577 | publication date | 2003-08-01 | |
| P1433 | published in | Nature Genetics | Q976454 |
| P1476 | title | Essentiality, not expressiveness, drives gene-strand bias in bacteria. | |
| P478 | volume | 34 |
| Q47259732 | A Comprehensive Overview of Online Resources to Identify and Predict Bacterial Essential Genes. |
| Q38040100 | A blueprint for a mutationist theory of replicative strand asymmetries formation |
| Q24814965 | A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species |
| Q41970825 | Accelerated gene evolution through replication-transcription conflicts |
| Q38726899 | Advances and perspectives in computational prediction of microbial gene essentiality |
| Q47840123 | An insight into the exploration of druggable genome of Streptococcus gordonii for the identification of novel therapeutic candidates |
| Q31162746 | Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal |
| Q34025917 | Atypical at skew in Firmicute genomes results from selection and not from mutation |
| Q36796433 | Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control |
| Q37328409 | Bacteria as computers making computers |
| Q47124668 | Broad-scale redistribution of mRNA abundance and transcriptional machinery in response to growth rate in Salmonella enterica serovar Typhimurium. |
| Q37677327 | Chromosomal replication dynamics and interaction with the β sliding clamp determine orientation of bacterial transposable elements. |
| Q55478398 | Chromosome architecture constrains horizontal gene transfer in bacteria. |
| Q33310743 | Chromosome structuring limits genome plasticity in Escherichia coli. |
| Q33525506 | Co-orientation of replication and transcription preserves genome integrity |
| Q33812360 | Codon Usage Patterns in Corynebacterium glutamicum: Mutational Bias, Natural Selection and Amino Acid Conservation |
| Q33242799 | Codon usage domains over bacterial chromosomes |
| Q37164010 | Codon usages of genes on chromosome, and surprisingly, genes in plasmid are primarily affected by strand-specific mutational biases in Lawsonia intracellularis |
| Q46247493 | Comparative analysis of the Burkholderia cenocepacia K56-2 essential genome reveals cell envelope functions that are uniquely required for survival in species of the genus Burkholderia |
| Q28482216 | Comparative genomics analysis of Mycobacterium ulcerans for the identification of putative essential genes and therapeutic candidates |
| Q40746585 | Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes. |
| Q46748671 | Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium |
| Q33529869 | Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion |
| Q34067211 | Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation |
| Q41862981 | Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient |
| Q38061090 | Computational approaches to predicting essential proteins: a survey |
| Q21266574 | Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola |
| Q35215750 | Different levels of transcriptional regulation due to trophic constraints in the reduced genome of Buchnera aphidicola APS. |
| Q34158580 | Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC. |
| Q24652525 | Dynamics of Pseudomonas aeruginosa genome evolution |
| Q28478865 | Enzymes are enriched in bacterial essential genes |
| Q59303864 | Error prevention and mitigation as forces in the evolution of genes and genomes |
| Q36272855 | Essentiality drives the orientation bias of bacterial genes in a continuous manner |
| Q33377709 | Evolution of genome architecture |
| Q41466765 | Evolution of tRNA Repertoires in Bacillus Inferred with OrthoAlign |
| Q82930567 | Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei |
| Q28485375 | Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by Piper betel derived compounds |
| Q40326495 | From essential to persistent genes: a functional approach to constructing synthetic life. |
| Q37371268 | Gene essentiality determines chromosome organisation in bacteria |
| Q58599727 | Gene inversion potentiates bacterial evolvability and virulence |
| Q33402657 | Genome Projector: zoomable genome map with multiple views |
| Q37833948 | Genome-wide codon usage profiling of ocular infective Chlamydia trachomatis serovars and drug target identification |
| Q35720230 | Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. |
| Q24801645 | Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data |
| Q33778615 | Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome |
| Q43674825 | Genomic comparisons among gamma-proteobacteria |
| Q24653367 | Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world |
| Q34973815 | Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny |
| Q36340118 | Growth rate regulation in Escherichia coli |
| Q26745912 | Hard-Wired Control of Bacterial Processes by Chromosomal Gene Location |
| Q35946493 | Human gene organization driven by the coordination of replication and transcription. |
| Q37228058 | Identification of replication origins in prokaryotic genomes. |
| Q41512551 | Impairment of replication fork progression mediates RNA polII transcription-associated recombination |
| Q57618457 | Inference and Analysis of the Relative Stability of Bacterial Chromosomes |
| Q24810299 | Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication |
| Q34237811 | Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli |
| Q38257014 | Linking RNA polymerase backtracking to genome instability in E. coli |
| Q33633542 | Long-range bidirectional strand asymmetries originate at CpG islands in the human genome |
| Q37590028 | Mechanisms and evolution of control logic in prokaryotic transcriptional regulation. |
| Q40890748 | Mechanisms of transcription-replication collisions in bacteria |
| Q90397754 | Methylation of the Suppressor Gene p16INK4a: Mechanism and Consequences |
| Q35841326 | Microbial lifestyle and genome signatures |
| Q53241306 | Non-Random Inversion Landscapes in Prokaryotic Genomes Are Shaped by Heterogeneous Selection Pressures. |
| Q35677477 | Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes |
| Q33682965 | Optimization of amino acid replacement costs by mutational pressure in bacterial genomes |
| Q33780274 | Phenotypic landscape of a bacterial cell |
| Q36864791 | Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants |
| Q34408766 | Predicting essential genes in prokaryotic genomes using a linear method: ZUPLS. |
| Q35551384 | Putative essential and core-essential genes in Mycoplasma genomes |
| Q52579540 | Random sequences rapidly evolve into de novo promoters. |
| Q47735172 | Recent development of Ori-Finder system and DoriC database for microbial replication origins |
| Q60953419 | Reconsidering plasmid maintenance factors for computational plasmid design |
| Q35608680 | Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer |
| Q36777307 | Replication fork barriers: pausing for a break or stalling for time? |
| Q36755308 | Replication fork stalling at natural impediments |
| Q42275355 | Replication-Transcription Conflicts Generate R-Loops that Orchestrate Bacterial Stress Survival and Pathogenesis |
| Q80390888 | Replication-associated purine asymmetry may contribute to strand-biased gene distribution |
| Q33643748 | Replication-biased genome organisation in the crenarchaeon Sulfolobus |
| Q36307709 | Replication-transcription conflicts in bacteria. |
| Q28652954 | Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling |
| Q43124959 | Selection effects on the positioning of genes and gene structures from the interplay of replication and transcription in bacterial genomes. |
| Q53627728 | Selection for chromosome architecture in bacteria. |
| Q41619712 | Selection for energy efficiency drives strand-biased gene distribution in prokaryotes |
| Q39983675 | Similar compositional biases are caused by very different mutational effects. |
| Q39143154 | Spatial and Temporal Control of Evolution through Replication-Transcription Conflicts |
| Q33314636 | Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression |
| Q33281613 | Strand compositional asymmetries in vertebrate large genes |
| Q37319936 | Strand-biased gene distribution in bacteria is related to both horizontal gene transfer and strand-biased nucleotide composition |
| Q46779387 | Strand-biased gene distribution, purine assymetry and environmental factors influence protein evolution in Bacillus |
| Q34399095 | Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis |
| Q35662402 | The B. subtilis Accessory Helicase PcrA Facilitates DNA Replication through Transcription Units |
| Q88950020 | The Clash of Macromolecular Titans: Replication-Transcription Conflicts in Bacteria |
| Q91866717 | The Impact of Global Transcriptional Regulation on Bacterial Gene Order |
| Q54630523 | The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA. |
| Q41170183 | The Transcriptome of Streptococcus pneumoniae Induced by Local and Global Changes in Supercoiling |
| Q42744238 | The adaptation of temperate bacteriophages to their host genomes. |
| Q92526183 | The bacterial cell cycle, chromosome inheritance and cell growth |
| Q24811526 | The genomic pattern of tDNA operon expression in E. coli |
| Q38000851 | The layout of a bacterial genome |
| Q24669735 | The mitochondrial transcription termination factor mTERF modulates replication pausing in human mitochondrial DNA |
| Q42097259 | The nature of mutations induced by replication–transcription collisions. |
| Q36280687 | The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces |
| Q43225835 | The replisome uses mRNA as a primer after colliding with RNA polymerase |
| Q36371202 | Towards multidimensional genome annotation |
| Q33260930 | Towards the identification of essential genes using targeted genome sequencing and comparative analysis |
| Q34624448 | Transcription regulatory elements are punctuation marks for DNA replication |
| Q91210709 | Tumor treating fields cause replication stress and interfere with DNA replication fork maintenance: Implications for cancer therapy |
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