| scholarly article | Q13442814 |
| P356 | DOI | 10.1016/J.CELL.2015.01.054 |
| P698 | PubMed publication ID | 25768910 |
| P50 | author | Carlo Manzo | Q41855902 |
| María García Parajo | Q41855908 | ||
| Maria Aurelia Ricci | Q67472614 | ||
| Maria Pia Cosma | Q21264337 | ||
| Melike Lakadamyali | Q21264399 | ||
| P2860 | cites work | Crystal structure of the nucleosome core particle at 2.8 A resolution | Q22122355 |
| A more efficient method to generate integration-free human iPS cells | Q29615748 | ||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1145-1158 | |
| P577 | publication date | 2015-03-01 | |
| P1433 | published in | Cell | Q655814 |
| P1476 | title | Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo. | |
| P478 | volume | 160 |
| Q47625593 | A Compendium of Methods to Analyze the Spatial Organization of Plant Chromatin |
| Q47139442 | A DNA origami platform for quantifying protein copy number in super-resolution |
| Q92420258 | A Drosophila cell-free system that senses DNA breaks and triggers phosphorylation signalling |
| Q51552282 | A Small Number of Residues Can Determine if Linker Histones Are Bound On or Off Dyad in the Chromatosome. |
| Q36094434 | A high-resolution imaging approach to investigate chromatin architecture in complex tissues |
| Q33685794 | A simple and cost-effective setup for super-resolution localization microscopy. |
| Q27321750 | Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains |
| Q38431700 | Advanced microscopy methods for visualizing chromatin structure |
| Q89481901 | Advances in Chromatin Imaging at Kilobase-Scale Resolution |
| Q64091765 | An Overview of Methods for Reconstructing 3-D Chromosome and Genome Structures from Hi-C Data |
| Q58780125 | Application of fluorescence lifetime imaging microscopy of DNA binding dyes to assess radiation-induced chromatin compaction changes |
| Q36308988 | Atomic force microscopy of chromatin arrays reveal non-monotonic salt dependence of array compaction in solution |
| Q89637741 | Beads on a string-nucleosome array arrangements and folding of the chromatin fiber |
| Q91604240 | Blank spots on the map: some current questions on nuclear organization and genome architecture |
| Q41137927 | Bridging the dynamics and organization of chromatin domains by mathematical modeling |
| Q30832476 | Budding yeast chromatin is dispersed in a crowded nucleoplasm in vivo. |
| Q57185063 | Challenges and guidelines toward 4D nucleome data and model standards |
| Q64982473 | Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin. |
| Q45235642 | ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells |
| Q90221574 | Chromatin Compaction Multiscale Modeling: A Complex Synergy Between Theory, Simulation, and Experiment |
| Q38683277 | Chromatin Dynamics in Genome Stability: Roles in Suppressing Endogenous DNA Damage and Facilitating DNA Repair |
| Q26801740 | Chromatin Dynamics in Lineage Commitment and Cellular Reprogramming |
| Q26799305 | Chromatin Dynamics in Vivo: A Game of Musical Chairs |
| Q88301146 | Chromatin Higher-Order Folding: A Perspective with Linker DNA Angles |
| Q91187980 | Chromatin accessibility and the regulatory epigenome |
| Q57822347 | Chromatin as a nuclear spring |
| Q38546403 | Chromatin at the nuclear periphery and the regulation of genome functions |
| Q91965440 | Chromatin condensation fluctuations rather than steady-state predict chromatin accessibility |
| Q35853754 | Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants |
| Q36331962 | Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes |
| Q64062869 | Chromatin fiber structural motifs as regulatory hubs of genome function? |
| Q38939491 | Chromatin fibers: from classical descriptions to modern interpretation |
| Q92309592 | Chromatin nanoscale compaction in live cells visualized by acceptor-to-donor ratio corrected Förster resonance energy transfer between DNA dyes |
| Q55206418 | ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy. |
| Q38549886 | Chromosome dynamics and folding in eukaryotes: Insights from live cell microscopy. |
| Q36789763 | ClusterViSu, a method for clustering of protein complexes by Voronoi tessellation in super-resolution microscopy |
| Q103826058 | Cohesin depleted cells rebuild functional nuclear compartments after endomitosis |
| Q88578034 | Compaction of Single-Molecule Megabase-Long Chromatin under the Influence of Macromolecular Crowding |
| Q55421355 | Comparative analysis of 2D and 3D distance measurements to study spatial genome organization. |
| Q54116646 | Contrasting epigenetic states of heterochromatin in the different types of mouse pluripotent stem cells. |
| Q99555351 | Coupling chromatin structure and dynamics by live super-resolution imaging |
| Q54961593 | Cryo-EM of nucleosome core particle interactions in trans. |
| Q57295891 | Cryo-ET reveals the macromolecular reorganization of mitotic chromosomes in vivo |
| Q47601037 | DNA Methylation Landscape Reflects the Spatial Organization of Chromatin in Different Cells. |
| Q49621361 | DNA knots occur in intracellular chromatin. |
| Q90640447 | DNA sequence-dependent chromatin architecture and nuclear hubs formation |
| Q47761435 | Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy |
| Q36168968 | Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells |
| Q90281093 | Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry |
| Q47668891 | Emerging roles of linker histones in regulating chromatin structure and function |
| Q52691517 | Emerging views of the nucleus as a cellular mechanosensor. |
| Q55081865 | Entropic effect of macromolecular crowding enhances binding between nucleosome clutches in heterochromatin, but not in euchromatin. |
| Q49687100 | Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity |
| Q53834846 | Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates. |
| Q36089885 | Evidence of selection for an accessible nucleosomal array in human |
| Q47326382 | Expansion microscopy of zebrafish for neuroscience and developmental biology studies. |
| Q58707734 | Exploiting the tunability of stimulated emission depletion microscopy for super-resolution imaging of nuclear structures |
| Q61811243 | Exploring chromatin hierarchical organization via Markov State Modelling |
| Q58614023 | Extended live-tracking and quantitative characterization of wound healing and cell migration with SiR-Hoechst |
| Q91865245 | Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization |
| Q40349812 | Fast Optimized Cluster Algorithm for Localizations (FOCAL): a spatial cluster analysis for super-resolved microscopy |
| Q53415760 | Formation of Chromatin Subcompartments by Phase Separation. |
| Q36363359 | Fractal Characterization of Chromatin Decompaction in Live Cells |
| Q58615807 | Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency |
| Q46391170 | Gathering by the Red Sea highlights links between environment and epigenetics |
| Q92561700 | Gene-Specific H1 Eviction through a Transcriptional Activator→p300→NAP1→H1 Pathway |
| Q38853113 | Greater Than the Sum of Parts: Complexity of the Dynamic Epigenome. |
| Q49909575 | Heterogeneous Spatial Distribution of Transcriptional Activity in Budding Yeast Nuclei |
| Q90615015 | Heterogeneous fluid-like movements of chromatin and their implications to transcription |
| Q27318183 | Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes |
| Q58793846 | High-resolution visualization of H3 variants during replication reveals their controlled recycling |
| Q58747295 | Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing |
| Q33635927 | Imaging chromatin nanostructure with binding-activated localization microscopy based on DNA structure fluctuations. |
| Q38806570 | Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations. |
| Q47566468 | Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion |
| Q89576485 | LPS-Challenged Macrophages Release Microvesicles Coated With Histones |
| Q36050570 | Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
| Q92480767 | Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis |
| Q38983485 | Linking Chromatin Fibers to Gene Folding by Hierarchical Looping |
| Q26772952 | Liquid-like behavior of chromatin |
| Q86075035 | Localization microscopy of DNA in situ using Vybrant(®) DyeCycle™ Violet fluorescent probe: A new approach to study nuclear nanostructure at single molecule resolution |
| Q101476614 | MLL4-associated condensates counterbalance Polycomb-mediated nuclear mechanical stress in Kabuki syndrome |
| Q28082519 | Many paths lead chromatin to the nuclear periphery |
| Q39740522 | Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements. |
| Q41022536 | Model-independent counting of molecules in single-molecule localization microscopy |
| Q48830776 | Molecule Counts in Localization Microscopy with Organic Fluorophores |
| Q45965504 | Multi-scale tracking reveals scale-dependent chromatin dynamics after DNA damage. |
| Q47958761 | Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation |
| Q89291581 | NMDA Receptor Autoantibodies in Autoimmune Encephalitis Cause a Subunit-Specific Nanoscale Redistribution of NMDA Receptors |
| Q58010952 | Natural chromatin is heterogeneous and self-associates in vitro |
| Q99594461 | Near-atomic resolution structures of interdigitated nucleosome fibres |
| Q49843515 | New dimensions of asymmetric division in vertebrates |
| Q90297937 | Nuclear compartmentalization, dynamics, and function of regulatory DNA sequences |
| Q91136869 | Nuclear cytometry and chromatin organization |
| Q28077403 | Nuclear organization and 3D chromatin architecture in cognition and neuropsychiatric disorders |
| Q42784016 | Nucleosomal arrays self-assemble into supramolecular globular structures lacking 30-nm fibers. |
| Q92646479 | Nucleosome positions alone can be used to predict domains in yeast chromosomes |
| Q42291808 | Nucleosome-free DNA regions differentially affect distant communication in chromatin |
| Q42112285 | Nucleosome-nucleosome interactions via histone tails and linker DNA regulate nuclear rigidity |
| Q27318842 | On characterizing protein spatial clusters with correlation approaches |
| Q91644556 | On the relations of phase separation and Hi-C maps to epigenetics |
| Q98228310 | Optimized Stochastic Optical Reconstruction Microscopy for Imaging Chromatin Structure in Pathological Tissue |
| Q38980344 | Organization and function of the 3D genome |
| Q55615916 | PARP1-dependent recruitment of the FBXL10-RNF68-RNF2 ubiquitin ligase to sites of DNA damage controls H2A.Z loading. |
| Q33835091 | Physical Considerations for Understanding Responses of Biological Systems to Low Doses of Ionizing Radiation: Nucleosome Clutches Constitute a Heterogeneous Distribution of Target Volumes |
| Q92718080 | Physical and data structure of 3D genome |
| Q64057051 | Polymer coil-globule phase transition is a universal folding principle of Drosophila epigenetic domains |
| Q64061617 | Principles of genome folding into topologically associating domains |
| Q38838633 | Quantitative 3D structured illumination microscopy of nuclear structures. |
| Q40108650 | Real-time visualization of chromatin modification in isolated nuclei. |
| Q100737215 | Regulation of single-cell genome organization into TADs and chromatin nanodomains |
| Q89360907 | Revisit of Reconstituted 30-nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures |
| Q58122884 | Rigid Basepair Monte Carlo Simulations of One-Start and Two-Start Chromatin Fiber Unfolding by Force |
| Q33821977 | Robust nonparametric quantification of clustering density of molecules in single-molecule localization microscopy |
| Q50913091 | SSRP1 Cooperates with PARP and XRCC1 to Facilitate Single-Strand DNA Break Repair by Chromatin Priming. |
| Q30667555 | SiR-Hoechst is a far-red DNA stain for live-cell nanoscopy |
| Q42048322 | Single Molecule Localization Microscopy of Mammalian Cell Nuclei on the Nanoscale |
| Q64079549 | Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II |
| Q33701784 | Single-Molecule Studies of the Linker Histone H1 Binding to DNA and the Nucleosome |
| Q48042582 | Single-molecule FRET reveals multiscale chromatin dynamics modulated by HP1α. |
| Q49839454 | Single-molecule compaction of megabase-long chromatin molecules by multivalent cations. |
| Q47881552 | Single-molecule force spectroscopy on histone H4 tail-cross-linked chromatin reveals fiber folding |
| Q90141264 | Single-molecule localization to study cytoskeletal structures, membrane complexes, and mechanosensors |
| Q36491208 | Spatial Organization of Epigenomes |
| Q48268311 | Stochastic Optical Reconstruction Microscopy (STORM). |
| Q40458985 | Stochastic fluorescence switching of nucleic acids under visible light illumination. |
| Q52657416 | Streamlined histone-based fluorescence lifetime imaging microscopy (FLIM) for studying chromatin organisation. |
| Q35987539 | Structural Mechanisms of Nucleosome Recognition by Linker Histones. |
| Q64989506 | Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells. |
| Q50016606 | Super-Resolution Microscopy in Studying the Structure and Function of the Cell Nucleus |
| Q100506990 | Super-resolution Microscopy with Single Molecules in Biology and Beyond-Essentials, Current Trends, and Future Challenges |
| Q58550718 | Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells |
| Q33694108 | Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes. |
| Q92093086 | Super-resolution imaging reveals the evolution of higher-order chromatin folding in early carcinogenesis |
| Q36341055 | Super-resolution microscopy approaches to nuclear nanostructure imaging |
| Q90854413 | Super-resolution microscopy demystified |
| Q91743027 | Super-resolution microscopy reveals how histone tail acetylation affects DNA compaction within nucleosomes in vivo |
| Q27315938 | Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast |
| Q90157898 | Tau oligomers mediate aggregation of RNA-binding proteins Musashi1 and Musashi2 inducing Lamin alteration |
| Q47625543 | Technical Review: Microscopy and Image Processing Tools to Analyze Plant Chromatin: Practical Considerations |
| Q47269443 | The 10-nm chromatin fiber and its relationship to interphase chromosome organization |
| Q92543231 | The High Mobility Group A1 (HMGA1) Chromatin Architectural Factor Modulates Nuclear Stiffness in Breast Cancer Cells |
| Q50002010 | The Pleiotropic Effects of the Canonical Wnt Pathway in Early Development and Pluripotency. |
| Q52723355 | The response to DNA damage in heterochromatin domains. |
| Q30845462 | The telomeric DNA damage response occurs in the absence of chromatin decompaction |
| Q47889621 | Three-Dimensional Super-Resolution in Eukaryotic Cells Using the Double-Helix Point Spread Function. |
| Q52345221 | Three-dimensional organization and dynamics of the genome. |
| Q90176327 | Toward Absolute Molecular Numbers in DNA-PAINT |
| Q38984575 | Turning single-molecule localization microscopy into a quantitative bioanalytical tool |
| Q99207801 | Two HIRA-dependent pathways mediate H3.3 de novo deposition and recycling during transcription |
| Q104617053 | Two-parameter single-molecule analysis for measurement of chromatin mobility |
| Q90658383 | Ultrastructural Details of Mammalian Chromosome Architecture |
| Q26766143 | Understanding Spatial Genome Organization: Methods and Insights |
| Q89499360 | Understanding the 3D genome: Emerging impacts on human disease |
| Q57161604 | Use of 3D imaging for providing insights into high-order structure of mitotic chromosomes |
| Q63359409 | Using enhanced number and brightness to measure protein oligomerization dynamics in live cells |
| Q57166584 | Visualizing and discovering cellular structures with super-resolution microscopy |
| Q89984164 | Visualizing the genome in high resolution challenges our textbook understanding |
| Q37608149 | Widespread Chromatin Accessibility at Repetitive Elements Links Stem Cells with Human Cancer |
| Q28074220 | Yeast HMO1: Linker Histone Reinvented |
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