| scholarly article | Q13442814 |
| P50 | author | R. Andrew Byrd | Q58325964 |
| P2093 | author name string | Jess Li | |
| Ranabir Das | |||
| Kalyan S Chakrabarti | |||
| P2860 | cites work | RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination | Q22010577 |
| Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1 | Q24293794 | ||
| Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine | Q24317405 | ||
| The activity of a human endoplasmic reticulum-associated degradation E3, gp78, requires its Cue domain, RING finger, and an E2-binding site | Q24535990 | ||
| SHIFTX2: significantly improved protein chemical shift prediction | Q24604571 | ||
| Structure of human ubiquitin-conjugating enzyme E2 G2 (UBE2G2/UBC7) | Q24642558 | ||
| Ubiquitin-like protein activation by E1 enzymes: the apex for downstream signalling pathways | Q24647626 | ||
| RING-type E3 ligases: master manipulators of E2 ubiquitin-conjugating enzymes and ubiquitination | Q26850008 | ||
| Basis for a ubiquitin-like protein thioester switch toggling E1–E2 affinity | Q27641129 | ||
| Allosteric Activation of E2-RING Finger-Mediated Ubiquitylation by a Structurally Defined Specific E2-Binding Region of gp78 | Q27646351 | ||
| Intrinsic motions along an enzymatic reaction trajectory | Q27649108 | ||
| Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution | Q27650851 | ||
| Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8’s E1 † ‡ | Q27651318 | ||
| Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2 | Q27658668 | ||
| Stochastic gate dynamics regulate the catalytic activity of ubiquitination enzymes | Q27696211 | ||
| Activation of a primed RING E3-E2-ubiquitin complex by non-covalent ubiquitin | Q27700027 | ||
| UCSF Chimera--a visualization system for exploratory research and analysis | Q27860666 | ||
| Scalable molecular dynamics with NAMD | Q27860718 | ||
| The Xplor-NIH NMR molecular structure determination package | Q27860805 | ||
| NMRPipe: a multidimensional spectral processing system based on UNIX pipes | Q27860859 | ||
| Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra | Q27860984 | ||
| The ubiquitin code | Q28265104 | ||
| Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions | Q28290988 | ||
| Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease | Q29547582 | ||
| The Energy Landscapes and Motions of Proteins | Q29616408 | ||
| The dynamic energy landscape of dihydrofolate reductase catalysis | Q29616409 | ||
| Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR. | Q30163903 | ||
| Slow dynamics in folded and unfolded states of an SH3 domain | Q30167790 | ||
| Studying excited states of proteins by NMR spectroscopy. | Q30329160 | ||
| CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data | Q30351917 | ||
| Structure prediction for CASP8 with all-atom refinement using Rosetta. | Q30380039 | ||
| The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientation | Q33508245 | ||
| Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis | Q33935989 | ||
| Microsecond time-scale conformational exchange in proteins: using long molecular dynamics trajectory to simulate NMR relaxation dispersion data | Q34113897 | ||
| Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules | Q34313182 | ||
| Ubiquitin in motion: structural studies of the ubiquitin-conjugating enzyme∼ubiquitin conjugate | Q34666396 | ||
| Ubiquitin-conjugating enzyme Cdc34 and ubiquitin ligase Skp1-cullin-F-box ligase (SCF) interact through multiple conformations | Q34958467 | ||
| Synergistic effect of two E2 ubiquitin conjugating enzymes in SCF(hFBH1) catalyzed polyubiquitination | Q35134871 | ||
| Structure of an E3:E2~Ub complex reveals an allosteric mechanism shared among RING/U-box ligases. | Q36291328 | ||
| The role of allostery in the ubiquitin-proteasome system | Q36721779 | ||
| Allosteric switch regulates protein-protein binding through collective motion | Q36742898 | ||
| Activation of UbcH5c~Ub is the result of a shift in interdomain motions of the conjugate bound to U-box E3 ligase E4B. | Q36882621 | ||
| Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region | Q36971798 | ||
| High-resolution comparative modeling with RosettaCM. | Q37263048 | ||
| The acidic tail of the Cdc34 ubiquitin-conjugating enzyme functions in both binding to and catalysis with ubiquitin ligase SCFCdc4. | Q37479215 | ||
| New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy | Q38680260 | ||
| Conformational Dynamics of the Partially Disordered Yeast Transcription Factor GCN4 | Q41853245 | ||
| Side chain dynamics of carboxyl and carbonyl groups in the catalytic function of Escherichia coli ribonuclease H. | Q41937316 | ||
| Conformational Selection in a Protein-Protein Interaction Revealed by Dynamic Pathway Analysis | Q42872555 | ||
| Measurement of slow (micros-ms) time scale dynamics in protein side chains by (15)N relaxation dispersion NMR spectroscopy: application to Asn and Gln residues in a cavity mutant of T4 lysozyme. | Q43677155 | ||
| Reconstructing NMR spectra of "invisible" excited protein states using HSQC and HMQC experiments | Q44173306 | ||
| Improved treatment of the protein backbone in empirical force fields. | Q44735024 | ||
| Solution structure of the ubiquitin-conjugating enzyme UbcH5B. | Q45136008 | ||
| Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34. | Q46711534 | ||
| Geometric Approximation: A New Computational Approach To Characterize Protein Dynamics from NMR Adiabatic Relaxation Dispersion Experiments. | Q50638593 | ||
| A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings. | Q52056461 | ||
| Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible. | Q52443969 | ||
| Dynamic activation of an allosteric regulatory protein. | Q54394984 | ||
| Direct measurements of the dissociation-rate constant for inhibitor-enzyme complexes via the T1 rho and T2 (CPMG) methods. | Q54630622 | ||
| A TROSY CPMG sequence for characterizing chemical exchange in large proteins | Q73289769 | ||
| NMR characterization of the dynamics of biomacromolecules | Q80435130 | ||
| P433 | issue | 5 | |
| P921 | main subject | protein ubiquitination | Q3547638 |
| P304 | page(s) | 794-805.e5 | |
| P577 | publication date | 2017-04-20 | |
| P1433 | published in | Structure | Q15709970 |
| P1476 | title | Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2 | |
| P478 | volume | 25 |
| Q55114669 | Active Site Gate Dynamics Modulate the Catalytic Activity of the Ubiquitination Enzyme E2-25K. |
| Q90539361 | Could confounding the allosteric communication of biotic machinery be an alternative path to antibiotics? |
| Q90687634 | UBC9 Mutant Reveals the Impact of Protein Dynamics on Substrate Selectivity and SUMO Chain Linkages |
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