De novo assembly and comparative transcriptome analysis of Monilinia fructicola, Monilinia laxa and Monilinia fructigena, the causal agents of brown rot on stone fruits.

scientific article published on 5 June 2018

De novo assembly and comparative transcriptome analysis of Monilinia fructicola, Monilinia laxa and Monilinia fructigena, the causal agents of brown rot on stone fruits. is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1104385348
P356DOI10.1186/S12864-018-4817-4
P932PMC publication ID5987419
P698PubMed publication ID29866047

P50authorRita Milvia De Miccolis AngeliniQ57402588
Donato GerinQ57402581
P2093author name stringCaterina Rotolo
Stefania Pollastro
Domenico Abate
Francesco Faretra
P2860cites workBLAST+: architecture and applicationsQ21284368
The paralogous pairs of genes involved in clavulanic acid and clavam metabolite biosynthesis are differently regulated in Streptomyces clavuligerusQ24562879
Role of Heat-Shock Proteins in Cellular Function and in the Biology of FungiQ26765766
Secondary metabolites in fungus-plant interactionsQ26795459
The essential phosphoinositide kinase MSS-4 is required for polar hyphal morphogenesis, localizing to sites of growth and cell fusion in Neurospora crassaQ27331207
Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerizationQ27679020
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataQ27860819
Production of cross-kingdom oxylipins by pathogenic fungi: An update on their role in development and pathogenicityQ28075094
Rhs proteins from diverse bacteria mediate intercellular competitionQ28489052
Galactose oxidase from Fusarium oxysporum--expression in E. coli and P. pastoris and biochemical characterizationQ28540066
Secreted Alpha-N-Arabinofuranosidase B Protein Is Required for the Full Virulence of Magnaporthe oryzae and Triggers Host DefencesQ28552813
Curation of characterized glycoside hydrolases of fungal originQ28732506
A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to landQ28755037
Trimmomatic: a flexible trimmer for Illumina sequence dataQ29547278
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchQ29547461
Interaction Proteomics Suggests a New Role for the Tfs1 Protein in YeastQ57839755
Phylogenetic analysis and substrate specificity of GH2 β-mannosidases from Aspergillus speciesQ61562863
The isopenicillin-N acyltransferase of Penicillium chrysogenum has isopenicillin-N amidohydrolase, 6-aminopenicillanic acid acyltransferase and penicillin amidase activities, all of which are encoded by the single penDE geneQ72863777
Growth and aggressiveness factors affecting Monilinia spp. survival peachesQ87375128
The development-specific protein (Ssp1) from Sclerotinia sclerotiorum is encoded by a novel gene expressed exclusively in sclerotium tissuesQ43869986
Cellobiose dehydrogenase production by Sclerotium species pathogenic to plants.Q44103716
Fungal-specific transcription factor AbPf2 activates pathogenicity in Alternaria brassicicolaQ44245943
Characterization of a phenylacetate-CoA ligase from Penicillium chrysogenumQ46332890
Production of the antibiotic secondary metabolite solanapyrone A by the fungal plant pathogen Ascochyta rabiei during fruiting body formation in saprobic growthQ46429796
Fungal effector protein AVR2 targets diversifying defense-related cys proteases of tomatoQ46616039
Vegetative compatibility groups and sexual reproduction among Spanish Monilinia fructicola isolates obtained from peach and nectarine orchards, but not Monilinia laxa.Q46889675
The Tri4 gene of Fusarium sporotrichioides encodes a cytochrome P450 monooxygenase involved in trichothecene biosynthesisQ48072040
Hydrolysis of beta-1,3/1,6-glucan by glycoside hydrolase family 16 endo-1,3(4)-beta-glucanase from the basidiomycete Phanerochaete chrysosporiumQ48107534
A Blumeria graminis gene family encoding proteins with a C-terminal variable region with homologues in pathogenic fungiQ48237288
Adaptation of proteases and carbohydrates of saprophytic, phytopathogenic and entomopathogenic fungi to the requirements of their ecological niches.Q51207985
Mating System in the Brown Rot Pathogens Monilinia fructicola, M. laxa, and M. fructigenaQ57049539
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysisQ29615950
WEGO: a web tool for plotting GO annotationsQ29616658
AAA+ proteins: have engine, will workQ29617410
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequencesQ30002335
Optimizing de novo assembly of short-read RNA-seq data for phylogenomicsQ30625869
The Arabidopsis tetratricopeptide repeat-containing protein TTL1 is required for osmotic stress responses and abscisic acid sensitivity.Q33343186
Aminoglycosides: activity and resistanceQ33548221
Sphingolipid biosynthetic pathway genes FEN1 and SUR4 modulate amphotericin B resistance.Q33622748
Methylglyoxal in living organisms: chemistry, biochemistry, toxicology and biological implicationsQ33793764
Requirement of monooxygenase-mediated steps for sterigmatocystin biosynthesis by Aspergillus nidulansQ33986497
The TRI11 gene of Fusarium sporotrichioides encodes a cytochrome P-450 monooxygenase required for C-15 hydroxylation in trichothecene biosynthesisQ34070997
A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditionsQ34075929
Mutational analysis of the glycosylphosphatidylinositol (GPI) anchor pathway demonstrates that GPI-anchored proteins are required for cell wall biogenesis and normal hyphal growth in Neurospora crassaQ34442112
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologsQ34480034
Screening of a Botrytis cinerea one-hybrid library reveals a Cys2His2 transcription factor involved in the regulation of secondary metabolism gene clustersQ34581779
Bioprospecting for trichothecene 3-O-acetyltransferases in the fungal genus Fusarium yields functional enzymes with different abilities to modify the mycotoxin deoxynivalenolQ34738017
Ergot alkaloid biosynthesis in Aspergillus fumigatus: FgaAT catalyses the acetylation of fumigaclavine B.Q34996875
Glycosylphosphatidylinositol-anchored proteins in Fusarium graminearum: inventory, variability, and virulenceQ35060614
The nitrilase family of CN hydrolysing enzymes - a comparative studyQ35591246
RNase III enzymes and the initiation of gene silencingQ35675165
The genome of newly classified Ochroconis mirabilis: Insights into fungal adaptation to different living conditions.Q35914039
Purification and characterization of a 1,2,4-trihydroxybenzene 1,2-dioxygenase from the basidiomycete Phanerochaete chrysosporiumQ35967837
Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches.Q36078324
Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napusQ36327223
Protein translocation across biological membranesQ36328629
A fungal family of transcriptional regulators: the zinc cluster proteinsQ36588772
Characterizations and functions of regulator of G protein signaling (RGS) in fungi.Q38126786
Essential letters in the fungal alphabet: ABC and MFS transporters and their roles in survival and pathogenicityQ38216341
Cation Diffusion Facilitator family: Structure and functionQ38431694
Brown Rot Strikes Prunus Fruit: An Ancient Fight Almost Always Lost.Q38822565
Gliotoxin production by clinical and environmental Aspergillus fumigatus strainsQ40118690
Prediction driven functional annotation of hypothetical proteins in the major facilitator superfamily of S. aureus NCTC 8325.Q40333271
Ss-Rhs1, a secretory Rhs repeat-containing protein, is required for the virulence of Sclerotinia sclerotiorum.Q40620535
Fungal Lactamases: Their Occurrence and FunctionQ42363067
Mutational analysis of the thienamycin biosynthetic gene cluster from Streptomyces cattleyaQ42706319
Overexpression of a redox-regulated cutinase gene, MfCUT1, increases virulence of the brown rot pathogen Monilinia fructicola on Prunus spp.Q43197778
The Botrytis cinerea aspartic proteinase family.Q43255885
Characterization of the cytochrome b (cyt b) gene from Monilinia species causing brown rot of stone and pome fruit and its significance in the development of QoI resistance.Q43641260
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesedgeRQ113334690
P433issue1
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
Monilinia fructigenaQ1620122
Monilinia laxaQ2313186
Monilinia fructicolaQ6900282
P304page(s)436
P577publication date2018-06-05
P1433published inBMC GenomicsQ15765854
P1476titleDe novo assembly and comparative transcriptome analysis of Monilinia fructicola, Monilinia laxa and Monilinia fructigena, the causal agents of brown rot on stone fruits
P478volume19

Reverse relations

cites work (P2860)
Q57795985Genome sequence of the brown rot fungal pathogen Monilinia fructigena
Q90327510New High-Quality Draft Genome of the Brown Rot Fungal Pathogen Monilinia fructicola
Q99711600Proteomic Studies to Understand the Mechanisms of Peach Tissue Degradation by Monilinia laxa

Search more.