An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

scholarly article by Henrik Nilsson et al published November 2010 in Fungal Ecology

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.FUNECO.2010.05.002

P50authorKessy AbarenkovQ30513178
Rolf Henrik NilssonQ30513184
Martin HartmannQ56570419
Martin RybergQ66429477
Martin UnterseherQ66629469
Anthony S. AmendQ91841881
P2093author name stringErik Kristiansson
Johannes Bergsten
Ari Jumpponen
Vilmar Veldre
P2860cites workReconstructing the early evolution of Fungi using a six-gene phylogenyQ21972837
GenBankQ22065976
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Improved tools for biological sequence comparisonQ24652199
Profile hidden Markov modelsQ27860536
The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methodsQ28301143
Next-generation DNA sequencingQ29547447
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimatesQ29616592
Accuracy and quality of massively parallel DNA pyrosequencingQ29622857
The ITS region as a target for characterization of fungal communities using emerging sequencing technologiesQ30863771
Accurate determination of microbial diversity from 454 pyrosequencing dataQ33492259
Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphereQ33492995
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversityQ33496293
Fungal ecology catches fireQ33507988
Ecology of the rare microbial biosphere of the Arctic OceanQ33552250
The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, FungiQ35553154
Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha).Q36814666
Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetesQ42638683
Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.Q43212597
Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas.Q44355022
The UNITE database for molecular identification of fungi--recent updates and future perspectivesQ48065164
An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversityQ48071682
Fungal Community Ecology: A Hybrid Beast with a Molecular MasterQ55952094
Evolutionary studies of ectomycorrhizal fungi: recent advances and future directionsQ56618989
P433issue4
P921main subjectsoftwareQ7397
automationQ184199
software packageQ1995545
open-source softwareQ1130645
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)284-287
P577publication date2010-11-01
P1433published inFungal EcologyQ15817063
P1476titleAn open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
P478volume3