Conformational Diffusion and Helix Formation Kinetics

scientific article published in Physical Review Letters

Conformational Diffusion and Helix Formation Kinetics is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1103/PHYSREVLETT.85.2637
P698PubMed publication ID10978126

P50authorGerhard HummerQ41049131
Angel E. GarcíaQ89238894
P2093author name stringShekhar Garde
P2860cites workPathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solutionQ28286232
How does a protein fold?Q28299554
From Levinthal to pathways to funnelsQ28300934
Theory of protein folding: the energy landscape perspectiveQ30428743
Protein folding and unfolding on a complex energy landscapeQ30840310
Mechanisms and kinetics of beta-hairpin formationQ35076728
Serotonin receptor cDNA cloned from Lymnaea stagnalisQ36023415
Entropic barriers, transition states, funnels, and exponential protein folding kinetics: a simple modelQ36281946
Fast events in protein folding: helix melting and formation in a small peptide.Q36789506
Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' modelQ36871997
Folding dynamics and mechanism of beta-hairpin formationQ36890665
Observation of strange kinetics in protein foldingQ37194472
Molecular dynamics simulations of the unfolding of an alpha-helical analogue of ribonuclease A S-peptide in waterQ44354473
Unfolding of an ?-helix in waterQ44974805
Molecular dynamics simulations of helix denaturationQ47637533
Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.Q52035295
Theory of the Phase Transition between Helix and Random Coil in Polypeptide ChainsQ56522033
Molecular dynamics simulations of synthetic peptide foldingQ71543068
Folding-unfolding thermodynamics of a beta-heptapeptide from equilibrium simulationsQ74452346
Large-amplitude nonlinear motions in proteinsQ74514543
P433issue12
P407language of work or nameEnglishQ1860
P304page(s)2637-2640
P577publication date2000-09-18
P1433published inPhysical Review LettersQ2018386
P1476titleConformational Diffusion and Helix Formation Kinetics
P478volume85

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cites work (P2860)
Q34014321Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds
Q38446474Catch bond-like kinetics of helix cracking: network analysis by molecular dynamics and milestoning
Q36024304Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding
Q51016925Determinants of Helix Formation for a Kv1.3 Transmembrane Segment inside the Ribosome Exit Tunnel.
Q42150475Di-Cysteine S,S-Tetrazine: A Potential Ultra-fast Photochemical Trigger to Explore the Early Events of Peptide/Protein Folding
Q36277713Diffusion models of protein folding
Q50940408Dynamic coupling between coordinates in a model for biomolecular isomerization.
Q50953724Dynamic properties of force fields.
Q35064529Early events in protein folding
Q42178332Experiments and comprehensive simulations of the formation of a helical turn
Q34189691Exploring the helix-coil transition via all-atom equilibrium ensemble simulations
Q33279381Folding and unfolding of a photoswitchable peptide from picoseconds to microseconds.
Q30164860Folding of a highly conserved diverging turn motif from the SH3 domain
Q41667749Free-energy profiles of membrane insertion of the M2 transmembrane peptide from influenza A virus
Q33927792Functionally important conformations of the Met20 loop in dihydrofolate reductase are populated by rapid thermal fluctuations
Q30819952Helix formation via conformation diffusion search
Q43648680Improved theoretical description of protein folding kinetics from rotations in the phase space of relevant order parameters.
Q74076608Kinetic transition in model proteins with a denatured native spinodal
Q46257808Kinetics of the coil-to-helix transition on a rough energy landscape.
Q35059469Length Dependent Helix-Coil Transition Kinetics of Nine Alanine-Based Peptides
Q30735457Measuring dynamic flexibility of the coil state of a helix-forming peptide
Q41037954Minimal folding pathways for coarse-grained biopolymer fragments
Q35643122Native contact density and nonnative hydrophobic effects in the folding of bacterial immunity proteins
Q51877373Peptide folding kinetics from replica exchange molecular dynamics.
Q35143250Picosecond conformational transition and equilibration of a cyclic peptide
Q91820539Position-, disorder-, and salt-dependent diffusion in binding-coupled-folding of intrinsically disordered proteins
Q34133291Protein folding by distributed computing and the denatured state ensemble.
Q36472755Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet
Q34183582Role of Backbone Hydration and Salt-Bridge Formation in Stability of α-Helix in Solution
Q56931442Simple off-lattice model to study the folding and aggregation of peptides
Q44402417Spectroscopic Studies of Structural Changes in Two β-Sheet-Forming Peptides Show an Ensemble of Structures that Unfold Noncooperatively
Q43864571Structure of Met-enkephalin in explicit aqueous solution using replica exchange molecular dynamics
Q34199126The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions
Q33324157Theoretical study of the three-phase contact line and its tension in adsorbed colloid-polymer mixtures

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