The ECF Classification: A Phylogenetic Reflection of the Regulatory Diversity in the Extracytoplasmic Function σ Factor Protein Family

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The ECF Classification: A Phylogenetic Reflection of the Regulatory Diversity in the Extracytoplasmic Function σ Factor Protein Family is …
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P356DOI10.1002/9781119004813.CH7

P2093author name stringThorsten Mascher
Daniela Pinto
P2860cites workThe ECF sigma factor σTis involved in osmotic and oxidative stress responses in Caulobacter crescentusQ57046107
New knowledge from old: in silico discovery of novel protein domains in Streptomyces coelicolorQ24805215
Conserved and variable functions of the sigmaE stress response in related genomesQ24811266
Identification and structure of the anti-sigma factor-binding domain of the disulphide-stress regulated sigma factor sigma(R) from Streptomyces coelicolorQ27639824
A Conserved Structural Module Regulates Transcriptional Responses to Diverse Stress Signals in BacteriaQ27647837
Structural and Biochemical Bases for the Redox Sensitivity of Mycobacterium tuberculosis RslAQ27660054
Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of σ-factor activity by proteolysisQ27675886
Structural basis for sigma factor mimicry in the general stress response of AlphaproteobacteriaQ27678856
Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA σ-anti-σ complexQ27689853
The crystal structure of the anti-σ factor CnrY in complex with the σ factor CnrH shows a new structural class of anti-σ factors targeting extracytoplasmic function σ factorsQ27690037
WebLogo: A Sequence Logo GeneratorQ27860646
The leucine-rich repeat: a versatile binding motifQ28305186
The Mycobacterium tuberculosis SigD sigma factor controls the expression of ribosome-associated gene products in stationary phase and is required for full virulenceQ28486649
RseA, the SigE specific anti-sigma factor of Mycobacterium tuberculosis, is inactivated by phosphorylation-dependent ClpC1P2 proteolysisQ28486942
A mycobacterial extracytoplasmic function sigma factor involved in survival following stressQ28487263
The Mycobacterium tuberculosis extracytoplasmic-function sigma factor SigL regulates polyketide synthases and secreted or membrane proteins and is required for virulenceQ28487267
Functional analysis of PvdS, an iron starvation sigma factor of Pseudomonas aeruginosaQ28492702
Phosphate starvation relayed by PhoB activates the expression of the Pseudomonas aeruginosa σvreI ECF factor and its target genesQ28492733
Use of cell wall stress to characterize sigma 22 (AlgT/U) activation by regulated proteolysis and its regulon in Pseudomonas aeruginosaQ28493041
Involvement of SigT and RstA in the differentiation of Streptomyces coelicolorQ28504064
RsrA, an anti-sigma factor regulated by redox changeQ28504098
The tetratricopeptide repeat: a structural motif mediating protein-protein interactionsQ29541281
WD40 proteins propel cellular networks.Q30156873
Cupins: the most functionally diverse protein superfamily?Q30164325
Classification of the caspase-hemoglobinase fold: detection of new families and implications for the origin of the eukaryotic separinsQ30809775
Production of mycobacterial cell wall glycopeptidolipids requires a member of the MbtH-like protein familyQ31069254
The Rip1 protease of Mycobacterium tuberculosis controls the SigD regulonQ33899561
CorE from Myxococcus xanthus is a copper-dependent RNA polymerase sigma factor.Q33926855
Extra cytoplasmic function σ factor activation.Q34258009
Multiple Sigma Subunits and the Partitioning of Bacterial Transcription SpaceQ34267512
Reactive oxygen species-inducible ECF σ factors of Bradyrhizobium japonicumQ34391588
Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicumQ34401853
Extracytoplasmic function (ECF) sigma factor σF is involved in Caulobacter crescentus response to heavy metal stressQ34416885
Multiple Rieske proteins in prokaryotes: where and why?Q34465445
Heme-responsive transcriptional activation of Bordetella bhu genesQ34513969
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responsesQ34514019
The extracytoplasmic function (ECF) sigma factorsQ34695160
The extra-cytoplasmic function sigma factor sigX modulates biofilm and virulence-related properties in Pseudomonas aeruginosaQ35049007
Design principles of the proteolytic cascade governing the sigmaE-mediated envelope stress response in Escherichia coli: keys to graded, buffered, and rapid signal transduction.Q35565304
Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase sigma factors involved in the regulation of extracytoplasmic functionsQ35648817
Control of the alternative sigma factor sigmaE in Escherichia coliQ35737964
Regulation of the Escherichia coli sigma-dependent envelope stress responseQ35752924
Role of the Porphyromonas gingivalis extracytoplasmic function sigma factor, SigH.Q35910764
The sigma 70 family: sequence conservation and evolutionary relationshipsQ36112378
Transmembrane transcriptional control (surface signalling) of the Escherichia coli Fec typeQ36231141
Secreted-protein response to sigmaU activity in Streptomyces coelicolorQ36421850
The Extracytoplasmic Function Sigma Factor EcfO Protects Bacteroides fragilis against Oxidative StressQ36506198
Organization and evolution of the biological response to singlet oxygen stressQ36964081
The activity of σV, an extracytoplasmic function σ factor of Bacillus subtilis, is controlled by regulated proteolysis of the anti-σ factor RsiV.Q36970952
Sigma factor mimicry involved in regulation of general stress responseQ37097175
Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promotersQ37279503
Dual positive feedback regulation of protein degradation of an extra-cytoplasmic function σ factor for cell differentiation in Streptomyces coelicolorQ37312211
Regulated intramembrane proteolysis in the control of extracytoplasmic function sigma factors.Q37602768
An extracytoplasmic-function sigma factor is involved in a pathway controlling beta-exotoxin I production in Bacillus thuringiensis subsp. thuringiensis strain 407-1Q37735198
Signaling diversity and evolution of extracytoplasmic function (ECF) σ factorsQ38087112
Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genesQ38308046
Role of the extracytoplasmic function sigma factor RpoE4 in oxidative and osmotic stress responses in Rhizobium etliQ38354938
Structure and function of bacterial sigma factorsQ39532182
Identification of proteins likely to be involved in morphogenesis, cell division, and signal transduction in Planctomycetes by comparative genomicsQ39548571
SigM, an extracytoplasmic function sigma factor of Bacillus subtilis, is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stressQ39757003
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promotersQ39793993
hrpL activates Erwinia amylovora hrp gene transcription and is a member of the ECF subfamily of sigma factorsQ39838950
Examination of Mycobacterium tuberculosis sigma factor mutants using low-dose aerosol infection of guinea pigs suggests a role for SigC in pathogenesis.Q40273626
The Bacillus subtilis extracytoplasmic-function sigmaX factor regulates modification of the cell envelope and resistance to cationic antimicrobial peptides.Q40583752
Environmental Sensing in Actinobacteria: a Comprehensive Survey on the Signaling Capacity of This PhylumQ40926419
Ecf, an alternative sigma factor from Neisseria gonorrhoeae, controls expression of msrAB, which encodes methionine sulfoxide reductase.Q41672569
Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domainQ41763911
The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genesQ41819510
Feed-forward regulation of microbisporicin biosynthesis in Microbispora corallinaQ41822480
The Extracytoplasmic Function Sigma Factor SigY Is Important for Efficient Maintenance of the Spβ Prophage That Encodes Sublancin inBacillus subtilisQ41843486
PhyR is involved in the general stress response of Methylobacterium extorquens AM1Q41911390
The RpoT regulon of Pseudomonas putida DOT-T1E and its role in stress endurance against solventsQ42021877
A caulobacter crescentus extracytoplasmic function sigma factor mediating the response to oxidative stress in stationary phaseQ42065635
Knockout of extracytoplasmic function sigma factor ECF-10 affects stress resistance and biofilm formation in Pseudomonas putida KT2440.Q42107396
Features of Rhodobacter sphaeroides ChrR required for stimuli to promote the dissociation of σ(E)/ChrR complexesQ42152705
Regulation of mycothiol metabolism by sigma(R) and the thiol redox sensor anti-sigma factor RsrA.Q42171225
Evidence for a novel protease governing regulated intramembrane proteolysis and resistance to antimicrobial peptides in Bacillus subtilisQ42410583
Message from a human gut symbiont: sensitivity is a prerequisite for sharingQ42616426
An extracytoplasmic function sigma factor acts as a general stress response regulator in Sinorhizobium meliloti.Q42619704
Evolution of the mycobacterial SigK regulonQ42642724
The sigmaE-mediated response to extracytoplasmic stress in Escherichia coli is transduced by RseA and RseB, two negative regulators of sigmaE.Q42656673
Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosisQ42749655
A new staphylococcal sigma factor in the conserved gene cassette: functional significance and implication for the evolutionary processesQ43169248
Different roles for anti-sigma factors in siderophore signalling pathways of Pseudomonas aeruginosaQ43248632
Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellus).Q43564242
Defining the disulphide stress response in Streptomyces coelicolor A3(2): identification of the sigmaR regulon.Q43818281
The HrpX/HrpY two-component system activates hrpS expression, the first step in the regulatory cascade controlling the Hrp regulon in Pantoea stewartii subsp. stewartiiQ44371097
The regulatory cascade that activates the Hrp regulon in Erwinia herbicola pv. gypsophilaeQ44371098
The PhyR-sigma(EcfG) signalling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum.Q45953116
A two-component system, an anti-sigma factor and two paralogous ECF sigma factors are involved in the control of general stress response in Caulobacter crescentusQ46860443
A putative two-component signal transduction system regulates sigmaE, a sigma factor required for normal cell wall integrity in Streptomyces coelicolor A3(2).Q47945924
An extracytoplasmic function sigma factor, σ(25), differentially regulates avermectin and oligomycin biosynthesis in Streptomyces avermitilisQ52771260
Functional analysis of sigH expression in Corynebacterium glutamicumQ53622216
A proteomic approach of SigX function in Pseudomonas aeruginosa outer membrane compositionQ54450413
Haemophore-mediated signalling in Serratia marcescens: a new mode of regulation for an extra cytoplasmic function (ECF) sigma factor involved in haem acquisitionQ54501508
Reduced expression of antigenic proteins MPB70 and MPB83 in Mycobacterium bovis BCG strains due to a start codon mutation in sigK.Q54664510
The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family.Q54721978
Negative regulation of germination-arrest factor production in Pseudomonas fluorescens WH6 by a putative extracytoplasmic function sigma factorQ56978557
P921main subjectphylogeneticsQ171184
protein familyQ417841
P304page(s)64-96
P577publication date2016-08-12
P1476titleThe ECF Classification: A Phylogenetic Reflection of the Regulatory Diversity in the Extracytoplasmic Function σ Factor Protein Family

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Q64092453Promoter RNA sequencing (PRSeq) for the massive and quantitative promoter analysis in vitrocites workP2860

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