| human | Q5 |
| P269 | IdRef ID | 103306889 |
| P213 | ISNI | 0000000382408802 |
| P244 | Library of Congress authority ID | n2005182371 |
| P691 | NL CR AUT ID | xx0306443 |
| P1207 | NUKAT ID | n2013230199 |
| P856 | official website | https://orbit.dtu.dk/en/persons/8a1eb030-2c37-4557-bce1-7bc6d5c75aaa |
| P496 | ORCID iD | 0000-0002-7116-2723 |
| P3368 | Prabook ID | 289676 |
| P1153 | Scopus author ID | 57195731147 |
| 7005978857 | ||
| P214 | VIAF ID | 264710849 |
| P10832 | WorldCat Entities ID | E39PBJjMGq7FqfDbJDrBK7MgKd |
| P166 | award received | Order of the Dannebrog | Q20872 |
| Nils Foss Excellence Prize | Q30301673 | ||
| EliteForsk Prize | Q30596142 | ||
| P27 | country of citizenship | Denmark | Q35 |
| P69 | educated at | Morsø Gymnasium | Q12327629 |
| Royal Veterinary and Agricultural University | Q22117108 | ||
| P108 | employer | Technical University of Denmark | Q1269766 |
| P734 | family name | Aarestrup | Q30238340 |
| Aarestrup | Q30238340 | ||
| Aarestrup | Q30238340 | ||
| P101 | field of work | epidemiology | Q133805 |
| antimicrobial drug | Q178859 | ||
| antibiotic resistance | Q380775 | ||
| infectious disease | Q18123741 | ||
| antimicrobial agent | Q68541106 | ||
| P735 | given name | Frank | Q220546 |
| Frank | Q220546 | ||
| P1412 | languages spoken, written or signed | Danish | Q9035 |
| P463 | member of | Akademiet for de Tekniske Videnskaber | Q12300773 |
| P106 | occupation | university teacher | Q1622272 |
| professor | Q121594 | ||
| epidemiologist | Q12765408 | ||
| P21 | sex or gender | male | Q6581097 |
| Q39044968 | .Analysis of the contribution of bacteriophage ST64B to in vitro virulence traits of Salmonella enterica serovar Typhimurium |
| Q31109570 | A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance |
| Q30381636 | A Livestock-Associated, Multidrug-Resistant, Methicillin-Resistant Staphylococcus aureus Clonal Complex 97 Lineage Spreading in Dairy Cattle and Pigs in Italy. |
| Q59231961 | A classification system for plasmids from enterococci and other Gram-positive bacteria |
| Q39003432 | A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds |
| Q59263912 | Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries |
| Q64005976 | Abundance and diversity of the fecal resistome in slaughter pigs and broilers in nine European countries |
| Q40462363 | Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations. |
| Q47130004 | An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes. |
| Q50123744 | An outbreak of multidrug-resistant, quinolone-resistant Salmonella enterica serotype typhimurium DT104. |
| Q61643659 | Analytical Profiling of Airplane Wastewater - a New Matrix for Mapping Worldwide Patterns of Drug Use and Abuse |
| Q59695085 | Antimicrobial Susceptibility of Listeria monocytogenes from Food Products |
| Q37302937 | Antimicrobial drug resistance of Salmonella isolates from meat and humans, Denmark |
| Q40061955 | Antimicrobial resistance and molecular epidemiology of Salmonella Rissen from animals, food products, and patients in Thailand and Denmark |
| Q50031662 | Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008. |
| Q37317260 | Antimicrobial resistance in swine production |
| Q34296661 | Antimicrobial resistance of thermophilic Campylobacter |
| Q38192813 | Antimicrobial resistance of zoonotic and commensal bacteria in Europe: the missing link between consumption and resistance in veterinary medicine |
| Q46092131 | Antimicrobial susceptibilities, phage types, and molecular characterization of Salmonella enterica serovar Enteritidis from chickens and chicken meat in turkey |
| Q30981703 | Antimicrobial susceptibility and occurrence of resistance genes among Salmonella enterica serovar Weltevreden from different countries |
| Q54049993 | Antimicrobial susceptibility and presence of resistance genes in staphylococci from poultry. |
| Q42917332 | Antimicrobial susceptibility and serovars of Salmonella from chickens and humans in Ibadan, Nigeria |
| Q39837526 | Antimicrobial susceptibility and tetracycline resistance determinant genotyping of Gallibacterium anatis |
| Q44917686 | Antimicrobial susceptibility of Haemophilus parasuis and Histophilus somni from pigs and cattle in Denmark |
| Q35138596 | Antimicrobial susceptibility patterns of thermophilic Campylobacter spp. from humans, pigs, cattle, and broilers in Denmark |
| Q44995461 | Antimicrobial-resistant Shigella infections from Iran: an overlooked problem? |
| Q43256705 | Antimicrobial-resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended-spectrum beta-lactamases in wild boars |
| Q63762132 | Antimicrobials in livestock |
| Q112717769 | Arrangements of Mobile Genetic Elements among Virotype E Subpopulation of Escherichia coli Sequence Type 131 Strains with High Antimicrobial Resistance and Virulence Gene Content |
| Q34212482 | Association between antimicrobial resistance in Escherichia coli isolates from food animals and blood stream isolates from humans in Europe: an ecological study |
| Q59149396 | Association between phage types and antimicrobial resistance among bovine Staphylococcus aureus from 10 countries |
| Q33736484 | Association between the consumption of antimicrobial agents in animal husbandry and the occurrence of resistant bacteria among food animals. |
| Q54046899 | Association between the use of avilamycin for growth promotion and the occurrence of resistance among Enterococcus faecium from broilers: epidemiological study and changes over time. |
| Q95513995 | Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries |
| Q50567148 | Associations between the use of antimicrobial agents for growth promotion and the occurrence of resistance among Enterococcus faecium from broilers and pigs in Denmark, Finland, and Norway. |
| Q39446332 | Associations of Streptococcus suis serotype 2 ribotype profiles with clinical disease and antimicrobial resistance |
| Q49990659 | Audouin's gull, a potential vehicle of an extended spectrum β-lactamase producing Salmonella Agona |
| Q63761902 | Author Correction: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries |
| Q34433505 | Avoparcin used as a growth promoter is associated with the occurrence of vancomycin-resistant Enterococcus faecium on Danish poultry and pig farms |
| Q28364938 | Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods |
| Q37713685 | Benchmarking of methods for genomic taxonomy |
| Q36065496 | Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data. |
| Q43929556 | Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania |
| Q40473620 | Biocide Susceptibility of Staphylococcus aureus CC398 and CC30 Isolates from Pigs and Identification of the Biocide Resistance Genes, qacG and qacC. |
| Q43758643 | Broiler chickens, broiler chicken meat, pigs and pork as sources of ExPEC related virulence genes and resistance in Escherichia coli isolates from community-dwelling humans and UTI patients |
| Q54676242 | Campylobacter concisus: an evaluation of certain phenotypic and genotypic characteristics. |
| Q92416836 | Ceftriaxone use in a tertiary care hospital in Kilimanjaro, Tanzania: A need for a hospital antibiotic stewardship programme |
| Q50551594 | Changes in the use of antimicrobials and the effects on productivity of swine farms in Denmark. |
| Q59232610 | Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104 |
| Q38553209 | Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104. |
| Q50132537 | Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104. |
| Q50129512 | Characterisation of recently emerged multiple antibiotic-resistant Salmonella enterica serovar typhimurium DT104 and other multiresistant phage types from Danish pig herds |
| Q50120594 | Characterisation of streptomycin resistance determinants in Danish isolates of Salmonella Typhimurium |
| Q30397700 | Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand |
| Q33996933 | Characterization of Salmonella occurring at high prevalence in a population of the land iguana Conolophus subcristatus in Galápagos Islands, Ecuador |
| Q63762156 | Characterization of Staphylococcus simulans strains isolated from cases of bovine mastitis |
| Q38871710 | Characterization of antimicrobial resistance in Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-mediated quinolone resistance marker in two novel serovars |
| Q50561755 | Characterization of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of third- or fourth-generation cephalosporins. |
| Q35807175 | Characterization of isolates of Salmonella enterica serovar Stanley, a serovar endemic to Asia and associated with travel |
| Q58888369 | Clonal diversity of Staphylococcus aureus originating from the small ruminants goats and sheep |
| Q50135102 | Clonal spread of tetracycline-resistant Salmonella typhimurium in Danish dairy herds |
| Q34108687 | Cloning and occurrence of czrC, a gene conferring cadmium and zinc resistance in methicillin-resistant Staphylococcus aureus CC398 isolates |
| Q56772383 | Comment on: Causal regulations vs. political will: why human zoonotic infections increase despite precautionary bans on animal antibiotics |
| Q92872698 | Comment on: Gross national income and antibiotic resistance in invasive isolates: analysis of the top-ranked antibiotic-resistant bacteria on the 2017 WHO priority list |
| Q37627020 | Commentary: Benefits and risks of antimicrobial use in food-producing animals |
| Q35866086 | Comparative Evaluation of the Antimicrobial Activity of Different Antimicrobial Peptides against a Range of Pathogenic Bacteria |
| Q58854096 | Comparative genomics of quinolone‐resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP) |
| Q40771537 | Comparative genomics of toxigenic and non-toxigenic Staphylococcus hyicus |
| Q50567089 | Comparison of antimicrobial resistance phenotypes and resistance genes in Enterococcus faecalis and Enterococcus faecium from humans in the community, broilers, and pigs in Denmark. |
| Q39668531 | Comparison of enterococcal populations in animals, humans, and the environment--a European study |
| Q43029912 | Comparison of two agar dilution methods and three agar diffusion methods, including the Etest, for antibiotic susceptibility testing of thermophilic Campylobacter species |
| Q28079668 | Consolidating and Exploring Antibiotic Resistance Gene Data Resources |
| Q43153923 | Copper resistance in Enterococcus faecium, mediated by the tcrB gene, is selected by supplementation of pig feed with copper sulfate |
| Q42339480 | Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads |
| Q45831079 | Correction: PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data. |
| Q61798685 | Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution |
| Q34740607 | Danish integrated antimicrobial resistance monitoring and research program |
| Q43235488 | Decreased susceptibility to zinc chloride is associated with methicillin resistant Staphylococcus aureus CC398 in Danish swine |
| Q33899744 | Design of a system for monitoring antimicrobial resistance in pathogenic, zoonotic and indicator bacteria from food animals |
| Q39080549 | Detection of linezolid resistance due to the optrA gene in Enterococcus faecalis from poultry meat from the American continent (Colombia). |
| Q40868282 | Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015. |
| Q54117254 | Detection of the satA gene and transferability of virginiamycin resistance in Enterococcus faecium from food-animals. |
| Q41934720 | Developing a framework to assess the costeffectiveness of COMPARE - a global platform for the exchange of sequence-based pathogen data |
| Q40127811 | Development of a miniaturised microarray-based assay for the rapid identification of antimicrobial resistance genes in Gram-negative bacteria |
| Q44980327 | Development of a standardized susceptibility test for campylobacter with quality-control ranges for ciprofloxacin, doxycycline, erythromycin, gentamicin, and meropenem. |
| Q50562394 | Development of penicillin resistance among Staphylococcus aureus isolated from bovine mastitis in Denmark and other countries. |
| Q50104729 | Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots |
| Q55236591 | Dissection of the antimicrobial and hemolytic activity of Cap18: Generation of Cap18 derivatives with enhanced specificity. |
| Q59149391 | Diversity and evolution of blaZ from Staphylococcus aureus and coagulase-negative staphylococci |
| Q50542560 | Diversity and stability of plasmids from glycopeptide-resistant Enterococcus faecium (GRE) isolated from pigs in Denmark. |
| Q44803731 | Diversity of the tetracycline resistance gene tet(M) and identification of Tn916- and Tn5801-like (Tn6014) transposons in Staphylococcus aureus from humans and animals |
| Q59132656 | Drivers and Dynamics of Methicillin-Resistant Livestock-Associated Staphylococcus aureus CC398 in Pigs and Humans in Denmark |
| Q33982516 | Effect of abolishment of the use of antimicrobial agents for growth promotion on occurrence of antimicrobial resistance in fecal enterococci from food animals in Denmark |
| Q37458301 | Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis |
| Q54105285 | Effect of tylosin used as a growth promoter on the occurrence of macrolide-resistant enterococci and staphylococci in pigs. |
| Q50121286 | Effects of the antimicrobial growth promoter tylosin on subclinical infection of pigs with Salmonella enterica serotype Typhimurium. |
| Q40175557 | Emergence of livestock-associated methicillin-resistant Staphylococcus aureus bloodstream infections in Denmark |
| Q112739700 | Emergence of methicillin resistance predates the clinical use of antibiotics |
| Q43309005 | Emergence of multidrug-resistant salmonella concord infections in Europe and the United States in children adopted from Ethiopia, 2003-2007. |
| Q43855245 | Emergence of resistance to fluoroquinolones among bacteria causing infections in food animals in Denmark |
| Q50045427 | Epidemiological investigation of Salmonella enterica serovar Kedougou in Thailand |
| Q47103580 | Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing. |
| Q54271083 | Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease. |
| Q42644284 | Escherichia coli isolates from broiler chicken meat, broiler chickens, pork, and pigs share phylogroups and antimicrobial resistance with community-dwelling humans and patients with urinary tract infection |
| Q50040682 | Establishing streptomycin epidemiological cut-off values for Salmonella and Escherichia coli |
| Q34462788 | Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes |
| Q33867226 | Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease. |
| Q112703469 | Evaluating the usefulness of next-generation sequencing for herb authentication |
| Q36252852 | Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing |
| Q45915712 | Evaluation of ceftiofur and cefquinome for phenotypic detection of methicillin resistance in Staphylococcus aureus using disk diffusion testing and MIC-determinations. |
| Q42972717 | Evaluation of eight different cephalosporins for detection of cephalosporin resistance in Salmonella enterica and Escherichia coli |
| Q50556430 | Evaluation of phenotypic and genotypic methods for epidemiological typing of Staphylococcus aureus isolates from bovine mastitis in Denmark. |
| Q62635883 | Evaluation of quinolones for use in detection of determinants of acquired quinolone resistance, including the new transmissible resistance mechanisms qnrA, qnrB, qnrS, and aac(6')Ib-cr, in Escherichia coli and Salmonella enterica and determinations o |
| Q37554493 | Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica |
| Q63762125 | Evidence-based policy for controlling antimicrobial resistance in the food chain in Denmark |
| Q36120212 | Expansion of a plasmid classification system for Gram-positive bacteria and determination of the diversity of plasmids in Staphylococcus aureus strains of human, animal, and food origins |
| Q57651462 | Extended-Spectrum -Lactamases, Food, and Cephalosporin Use in Food Animals |
| Q39510648 | External quality assurance system (EQAS) for identification of mastitis pathogens in Denmark from 2006 to 2011. |
| Q46920910 | External quality assurance system for antibiotic resistance in bacteria of animal origin in Europe (ARBAO-II), 2003. |
| Q36506470 | Extremely drug-resistant Salmonella enterica serovar Senftenberg infections in patients in Zambia |
| Q36884979 | Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark |
| Q50543171 | First description of an oxyimino-cephalosporin-resistant, ESBL-carrying Escherichia coli isolated from meat sold in Denmark. |
| Q50543527 | First description of blaCTX-M-1-carrying Escherichia coli isolates in Danish primary food production. |
| Q52804131 | First description of meticillin-resistant Staphylococcus aureus (MRSA) CC30 and CC398 from swine in Portugal. |
| Q54447224 | First detection of plasmid-mediated quinolone resistance (qnrA and qnrS) in Escherichia coli strains isolated from humans in Scandinavia. |
| Q50120127 | Fluoroquinolone resistance in Salmonella: a web discussion |
| Q34774394 | Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark |
| Q34774408 | Genome Sequences of Two Copper-Resistant Escherichia coli Strains Isolated from Copper-Fed Pigs |
| Q35878945 | Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark |
| Q35101083 | Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival |
| Q34983026 | Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica serovar typhi isolates originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever? |
| Q34917188 | Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012 |
| Q34191674 | Genomic variation in Salmonella enterica core genes for epidemiological typing |
| Q44186310 | Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo |
| Q53703910 | Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid. |
| Q34317087 | Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing |
| Q126260268 | Global Distribution and Diversity of Prevalent Sewage Water Plasmidomes |
| Q112701687 | Global Distribution of mcr Gene Variants in 214K Metagenomic Samples |
| Q27323055 | Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104. |
| Q58854100 | Global Microbial Identifier |
| Q33453559 | Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007. |
| Q62674947 | Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage |
| Q91723867 | Global phylogeography and ancient evolution of the widespread human gut virus crAssphage |
| Q54095569 | Glycopeptide resistance in Enterococcus faecium from broilers and pigs following discontinued use of avoparcin. |
| Q39782644 | Glycopeptide susceptibility among Danish Enterococcus faecium and Enterococcus faecalis isolates of animal and human origin and PCR identification of genes within the VanA cluster |
| Q44786425 | Harmonization of antimicrobial susceptibility testing among veterinary diagnostic laboratories in the five Nordic countries |
| Q43242214 | Heterogeneity among methicillin-resistant Staphylococcus aureus from Italian pig finishing holdings |
| Q46943070 | Heterologous expression of glycopeptide resistance vanHAX gene clusters from soil bacteria in Enterococcus faecalis |
| Q33729200 | High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology |
| Q50300785 | Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing |
| Q63762111 | Host Resistance, Genomics and Population Dynamics in a Enteritidis and Phage System |
| Q42548678 | Human deaths and third-generation cephalosporin use in poultry, Europe |
| Q42956831 | IS21-558 insertion sequences are involved in the mobility of the multiresistance gene cfr. |
| Q43741751 | IS6100-mediated genetic rearrangement within the complex class 1 integron In104 of the Salmonella genomic island 1. |
| Q35683677 | Identification and Antimicrobial Resistance of Bacteria Isolated from Probiotic Products Used in Shrimp Culture |
| Q48094921 | Identification of Tn5397-like and Tn916-like transposons and diversity of the tetracycline resistance gene tet(M) in enterococci from humans, pigs and poultry |
| Q50563936 | Identification of a Pseudomonas aeruginosa co-producing NDM-1, VIM-5 and VIM-6 metallo-β-lactamases in Denmark using whole-genome sequencing. |
| Q42730337 | Identification of a Tn1546-like (type 2) element in vancomycin-resistant Enterococcus faecium isolated from hospitalized patients in Japan |
| Q41981445 | Identification of acquired antimicrobial resistance genes |
| Q28596947 | Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition |
| Q63761904 | Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition |
| Q91316631 | Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites |
| Q33798308 | In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing |
| Q33737411 | In silico prediction of human pathogenicity in the γ-proteobacteria |
| Q38023251 | In vitro susceptibility testing of fluoroquinolone activity against Salmonella: recent changes to CLSI standards |
| Q39652720 | Incidence of high-level evernimicin resistance in Enterococcus faecium among food animals and humans |
| Q56769870 | Increasing transmission of antibiotic resistance from animals to humans |
| Q37874667 | Indications and patterns of therapeutic use of antimicrobial agents in the Danish pig production from 2002 to 2008. |
| Q24629324 | Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response |
| Q50043202 | International collaborative study on the occurrence of plasmid-mediated quinolone resistance in Salmonella enterica and Escherichia coli isolated from animals, humans, food and the environment in 13 European countries |
| Q39164319 | International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin. |
| Q43228971 | International spread of bla(CMY-2)-mediated cephalosporin resistance in a multiresistant Salmonella enterica serovar Heidelberg isolate stemming from the importation of a boar by Denmark from Canada |
| Q37334280 | International spread of multidrug-resistant Salmonella Schwarzengrund in food products |
| Q36030864 | Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections |
| Q42858215 | Is it time to change fluoroquinolone breakpoints for Salmonella spp.? |
| Q37349251 | Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? |
| Q57836925 | Isolation of vancomycin resistant Enterococcus faecium from food |
| Q50556332 | Lack of staphylococcal enterotoxin production among strains of Staphylococcus aureus from bovine mastitis in Denmark. |
| Q90546825 | Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform |
| Q61755536 | Large scale automated phylogenomical analysis of bacterial whole-genome isolates and the Evergreen platform |
| Q46130322 | Letter to the Editor: Macrolide Resistance in Campylobacter coli of Animal Origin in Denmark |
| Q63762362 | Library preparation and sequencing platform introduce bias in metagenomics characterisation of microbial communities |
| Q30352838 | Livestock origin for a human pandemic clone of community-associated methicillin-resistant Staphylococcus aureus |
| Q27320016 | Livestock-Associated Methicillin Resistant and Methicillin Susceptible Staphylococcus aureus Sequence Type (CC)1 in European Farmed Animals: High Genetic Relatedness of Isolates from Italian Cattle Herds and Humans |
| Q33632864 | MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads |
| Q42730239 | Macrolide resistance in Campylobacter coli of animal origin in Denmark |
| Q63762114 | Megaphages infect Prevotella and variants are widespread in gut microbiomes |
| Q26749161 | Meta-analysis of proportion estimates of Extended-Spectrum-Beta-Lactamase-producing Enterobacteriaceae in East Africa hospitals |
| Q35838250 | Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance |
| Q61818393 | Metagenomic analysis of viruses in toilet waste from long distance flights-A new procedure for global infectious disease surveillance |
| Q112299220 | Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage |
| Q89810569 | Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering |
| Q43183337 | Microbiologic and clinical features of Salmonella species isolated from bacteremic children in eastern Democratic Republic of Congo |
| Q112293745 | Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation |
| Q50069486 | Molecular characterisation of multidrug-resistant Salmonella enterica serovar Typhimurium isolates from Gomel region, Belarus. |
| Q37099516 | Molecular characterization and antimicrobial susceptibility of Salmonella isolates from infections in humans in Henan Province, China |
| Q35140054 | Molecular characterization and antimicrobial susceptibility testing of Escherichia coli isolates from patients with urinary tract infections in 20 Chinese hospitals |
| Q43928693 | Molecular characterization and occurrence of extended-spectrum beta-lactamase resistance genes among Salmonella enterica serovar Corvallis from Thailand, Bulgaria, and Denmark |
| Q40012646 | Molecular characterization of Escherichia coli strains isolated from pigs with edema disease |
| Q33704807 | Molecular characterization of extended-spectrum cephalosporinase-producing Salmonella enterica serovar Choleraesuis isolates from patients in Thailand and Denmark |
| Q58341865 | Molecular epidemiology of virulence and antimicrobial resistance determinants in Klebsiella pneumoniae from hospitalised patients in Kilimanjaro, Tanzania |
| Q112723176 | Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium |
| Q43218364 | Monitoring of antimicrobial resistance among food animals: principles and limitations. |
| Q46985246 | Multidrug resistance among different serotypes of clinical Salmonella isolates in Taiwan |
| Q24605958 | Multilocus sequence typing of total-genome-sequenced bacteria |
| Q63762215 | Nonhuman Reservoirs of Enterococci |
| Q34646743 | Nucleoside analogues are activated by bacterial deoxyribonucleoside kinases in a species-specific manner |
| Q46085450 | Occurrence and characterization of Salmonella Hiduddify from chickens and poultry meat in Nigeria |
| Q43928179 | Occurrence and characterization of Salmonella enterica subspecies enterica serovar 9,12:l,v:- strains from Bulgaria, Denmark, and the United States |
| Q36761561 | Occurrence of antimicrobial resistance among bacterial pathogens and indicator bacteria in pigs in different European countries from year 2002 - 2004: the ARBAO-II study |
| Q43331618 | Occurrence of glycopeptide resistance among Enterococcus faecium isolates from conventional and ecological poultry farms. |
| Q43169007 | Occurrence of integrons and antimicrobial resistance genes among Salmonella enterica from Brazil |
| Q43169154 | Occurrence of integrons and resistance genes among sulphonamide-resistant Shigella spp. from Brazil |
| Q54579215 | Oedema disease caused by O-rough Escherichia coli. |
| Q41604623 | Pasteurella multocida septicaemia and pneumonia after chemotherapy in a patient who had no known contact with animals |
| Q90628927 | Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach |
| Q30690828 | PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data |
| Q39029365 | Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania |
| Q50577120 | Phage types and antimicrobial resistance among Danish bovine Staphylococcus aureus isolates since the 1950s. |
| Q43220152 | Pheno- and genotyping of Staphylococcus epidermidis isolated from bovine milk and human skin |
| Q33785165 | Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation |
| Q37015596 | Pigs as source of methicillin-resistant Staphylococcus aureus CC398 infections in humans, Denmark |
| Q50070227 | Plasmid-mediated quinolone resistance determinant qnrS1 detected in Salmonella enterica serovar Corvallis strains isolated in Denmark and Thailand |
| Q50061758 | Plasmid-mediated quinolone resistance due to qnrB5 and qnrS1 genes in Salmonella enterica serovars Newport, Hadar and Saintpaul isolated from turkey meat in Denmark |
| Q112701691 | PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest |
| Q46270866 | PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens |
| Q37224091 | Population Genetic Structure of Listeria monocytogenes Strains as Determined by Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing |
| Q35187011 | Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak |
| Q91549035 | Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher' gut microbiomes |
| Q92822593 | Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks |
| Q50562607 | Presence of erm gene classes in gram-positive bacteria of animal and human origin in Denmark. |
| Q46990567 | Prevalence and antibiotic resistance of Salmonella isolated from a poultry farm and processing plant environment in the State of Kuwait |
| Q54358066 | Prevalence and characterization of cephalosporin resistance in nonpathogenic Escherichia coli from food-producing animals slaughtered in Poland. |
| Q34487453 | Prevalence and characterization of human Shigella infections in Henan Province, China, in 2006. |
| Q49722478 | Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a tertiary care hospital in Kilimanjaro, Tanzania |
| Q36793638 | Prevalence of antimicrobial resistance among bacterial pathogens isolated from cattle in different European countries: 2002-2004. |
| Q45223898 | Prevalence of beta-lactamases among ampicillin-resistant Escherichia coli and Salmonella isolated from food animals in Denmark |
| Q44544042 | Prevalence of extended-spectrum cephalosporinase (ESC)-producing Escherichia coli in Danish slaughter pigs and retail meat identified by selective enrichment and association with cephalosporin usage |
| Q46577820 | Prevalence of quinolone resistance mechanisms and associations to minimum inhibitory concentrations in quinolone-resistant Escherichia coli isolated from humans and swine in Denmark |
| Q34518439 | Priorities for antibiotic resistance surveillance in Europe. |
| Q92546835 | Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets |
| Q59679944 | Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System Participants in Identification and Susceptibility Testing of Thermotolerant Campylobacter spp. from 2003 to 2012 |
| Q59679938 | Proof of concept: Malaria rapid diagnostic tests and massively parallel sequencing for surveillance of molecular markers of antimalarial resistance in Bissau, Guinea-Bissau during 2014-2017 |
| Q92211517 | Proof of concept: used malaria rapid diagnostic tests applied for parallel sequencing for surveillance of molecular markers of anti-malarial resistance in Bissau, Guinea-Bissau during 2014-2017 |
| Q44038496 | Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor |
| Q34194136 | Quinolone and macrolide resistance in Campylobacter jejuni and C. coli: resistance mechanisms and trends in human isolates |
| Q50120569 | Quinolone resistance among Salmonella enterica from cattle, broilers, and swine in Denmark |
| Q46135433 | Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples. |
| Q30951338 | Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data |
| Q58694860 | Rapid and precise alignment of raw reads against redundant databases with KMA |
| Q37546541 | Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples |
| Q35853213 | Reads2Type: a web application for rapid microbial taxonomy identification |
| Q37713782 | Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli |
| Q41374810 | Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds |
| Q36302599 | Regulation of the erm(C) gene in Staphylococci from reservoir with different usage of macrolides |
| Q40733066 | Relationship between copper, glycopeptide, and macrolide resistance among Enterococcus faecium strains isolated from pigs in Denmark between 1997 and 2003. |
| Q42950457 | Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". |
| Q57651432 | Reply to Catry and Threlfall |
| Q113816153 | ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes |
| Q37291370 | Resistance in bacteria of the food chain: epidemiology and control strategies |
| Q40842394 | Resistance to antimicrobial agents used for animal therapy in pathogenic-, zoonotic- and indicator bacteria isolated from different food animals in Denmark: a baseline study for the Danish Integrated Antimicrobial Resistance Monitoring Programme (DA |
| Q43190084 | Resistant Salmonella virchow in quail products |
| Q37051430 | Results of use of WHO Global Salm-Surv external quality assurance system for antimicrobial susceptibility testing of Salmonella isolates from 2000 to 2007. |
| Q50053277 | Risk factors and epidemiology of the ten most common Salmonella serovars from patients in Thailand: 2002-2007. |
| Q35846072 | SCCmec Type IX Element in Methicillin Resistant Staphylococcusaureusspa Type t337 (CC9) Isolated from Pigs and Pork in Thailand |
| Q50287993 | SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data. |
| Q45938347 | Salmonella enterica serovar Typhimurium in Mauritius linked to consumption of marlin mousse. |
| Q44034103 | Salmonella lamphun: first isolation of a new Salmonella serovar in Thailand. |
| Q35879205 | Salmonella serovars from humans and other sources in Thailand, 1993-2002 |
| Q36932972 | Selection and persistence of CTX-M-producing Escherichia coli in the intestinal flora of pigs treated with amoxicillin, ceftiofur, or cefquinome. |
| Q50561752 | Serological characterization and antimicrobial susceptibility of Streptococcus suis isolates from diagnostic samples in Denmark during 1995 and 1996. |
| Q31045549 | Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection |
| Q50057650 | Shigella from humans in Thailand during 1993 to 2006: spatial-time trends in species and serotype distribution |
| Q35222674 | Solving the problem of comparing whole bacterial genomes across different sequencing platforms |
| Q43260623 | Spa type distribution in Staphylococcus aureus originating from pigs, cattle and poultry |
| Q30672153 | Spatio-temporal analysis of Salmonella surveillance data in Thailand. |
| Q62674944 | Specific gut microbiome members are associated with distinct immune markers in allogeneic hematopoietic stem cell transplantation |
| Q90098536 | Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation |
| Q43665694 | Spontaneous nisin-resistant Listeria monocytogenes mutants with increased expression of a putative penicillin-binding protein and their sensitivity to various antibiotics. |
| Q44125506 | Spread of Staphylococcus aureus resistant to penicillin and tetracycline within and between dairy herds. |
| Q112289087 | Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns |
| Q50559374 | Staphylococcal and other bacterial species associated with intramammary infections in Danish dairy herds. |
| Q35759760 | Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock |
| Q44275339 | Streptogramin resistance among Enterococcus faecium isolated from production animals in Denmark in 1997. |
| Q50555497 | Study of methicillin resistant Staphylococcus aureus (MRSA) in Danish pigs at slaughter and in imported retail meat reveals a novel MRSA type in slaughter pigs. |
| Q40844480 | Surveillance of antimicrobial resistance in bacteria isolated from food animals to antimicrobial growth promoters and related therapeutic agents in Denmark |
| Q63762136 | Susceptibility of Clostridium difficile Toward Antimicrobial Agents Used as Feed Additives for Food Animals |
| Q44512572 | Susceptibility of Escherichia coli and Enterococcus faecium isolated from pigs and broiler chickens to tetracycline degradation products and distribution of tetracycline resistance determinants in E. coli from food animals |
| Q44890381 | Susceptibility of different bacterial species isolated from food animals to copper sulphate, zinc chloride and antimicrobial substances used for disinfection |
| Q50562707 | Susceptibility testing of Actinobacillus pleuropneumoniae in Denmark. Evaluation of three different media of MIC-determinations and tablet diffusion tests. |
| Q43574251 | Sustainable farming: Get pigs off antibiotics |
| Q43444244 | Ten years of antimicrobial susceptibility testing of Salmonella from Danish pig farms |
| Q46816293 | Tetracycline consumption and occurrence of tetracycline resistance in Salmonella typhimurium phage types from Danish pigs |
| Q59404021 | The CGE Tool Box |
| Q63881021 | The COMPARE Data Hubs |
| Q92202420 | The COMPARE Data Hubs |
| Q34746929 | The EcoKI type I restriction-modification system in Escherichia coli affects but is not an absolute barrier for conjugation |
| Q36020924 | The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010. |
| Q58758986 | The Role of Outer Membrane Proteins and Lipopolysaccharides for the Sensitivity of to Antimicrobial Peptides |
| Q63762105 | The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries |
| Q64132409 | The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries |
| Q46344270 | The association between measurements of antimicrobial use and resistance in the faeces microbiota of finisher batches |
| Q50068407 | The attribution of human infections with antimicrobial resistant Salmonella bacteria in Denmark to sources of animal origin |
| Q50565648 | The dynamics of Staphylococcus aureus intramammary infection in nine Danish dairy herds. |
| Q44873439 | The effect of pH and storage on copper speciation and bacterial growth in complex growth media |
| Q33804076 | The effects of antibiotic usage in food animals on the development of antimicrobial resistance of importance for humans in Campylobacter and Escherichia coli |
| Q38865005 | The first attempt of an active integrated laboratory-based Salmonella surveillance programme in the north-eastern region of Nigeria. |
| Q91522578 | The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children |
| Q50053573 | The in vitro fitness cost of antimicrobial resistance in Escherichia coli varies with the growth conditions |
| Q35583491 | The livestock reservoir for antimicrobial resistance: a personal view on changing patterns of risks, effects of interventions and the way forward |
| Q50120422 | The pharmacodynamic effect of amoxicillin and danofloxacin against Salmonella typhimurium in an in-vitro pharmacodynamic model. |
| Q63762138 | The rarely reported tet(31) tetracycline resistance determinant is common in Gallibacterium anatis |
| Q37431495 | The role of the st313-td gene in virulence of Salmonella Typhimurium ST313. |
| Q30240583 | The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee. |
| Q89787037 | Towards a European health research and innovation cloud (HRIC) |
| Q33900328 | Transfer of antibiotic resistant bacteria from animals to man. |
| Q44132221 | Trends in antimicrobial susceptibility in relation to antimicrobial usage and presence of resistance genes in Staphylococcus hyicus isolated from exudative epidermitis in pigs |
| Q47743934 | Trends in the resistance to antimicrobial agents of Streptococcus suis isolates from Denmark and Sweden |
| Q45151677 | Upsurge of infections caused by Salmonella Concord among Ethiopian adoptees in Denmark, 2009. |
| Q33643078 | Use of antimicrobial growth promoters in food animals and Enterococcus faecium resistance to therapeutic antimicrobial drugs in Europe |
| Q90267171 | Using Genomics to Track Global Antimicrobial Resistance |
| Q63762106 | Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania |
| Q89581967 | Using sewage for surveillance of antimicrobial resistance |
| Q50156249 | Validation of the register-based lifetime antimicrobial usage measurement for finisher batches based on comparison with recorded antimicrobial usage at farm level |
| Q46513268 | Vancomycin-resistant Enterococcus faecalis isolates from a Danish patient and two healthy human volunteers are possibly related to isolates from imported turkey meat |
| Q36065193 | Veterinary drug usage and antimicrobial resistance in bacteria of animal origin |
| Q50557640 | Voluntary ban on cephalosporin use in Danish pig production has effectively reduced extended-spectrum cephalosporinase-producing Escherichia coli in slaughter pigs. |
| Q37333671 | WHO Global Salm-Surv external quality assurance system for serotyping of Salmonella isolates from 2000 to 2007. |
| Q50105874 | WHO global salm-surv external quality assurance system (EQAS): an important step toward improving the quality of Salmonella serotyping and antimicrobial susceptibility testing worldwide |
| Q55441219 | Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania. |
| Q34984421 | World Health Organization ranking of antimicrobials according to their importance in human medicine: A critical step for developing risk management strategies for the use of antimicrobials in food production animals |
| Q92578173 | Worldwide human mitochondrial haplogroup distribution from urban sewage |
| Q60653443 | Zinc resistance of Staphylococcus aureus of animal origin is strongly associated with methicillin resistance |
| Q33216632 | beta-Lactamases among extended-spectrum beta-lactamase (ESBL)-resistant Salmonella from poultry, poultry products and human patients in The Netherlands |
| Q43168968 | dfrA25, a novel trimethoprim resistance gene from Salmonella Agona isolated from a human urine sample in Brazil |
| Q37072053 | qnrD, a novel gene conferring transferable quinolone resistance in Salmonella enterica serovar Kentucky and Bovismorbificans strains of human origin |
| Q30583968 | snpTree--a web-server to identify and construct SNP trees from whole genome sequence data |
| Q39651680 | tcrB, a gene conferring transferable copper resistance in Enterococcus faecium: occurrence, transferability, and linkage to macrolide and glycopeptide resistance |
| Frank Møller Aarestrup | wikipedia |
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