| scholarly article | Q13442814 |
| P50 | author | Yinping Guo | Q84041524 |
| Tony Romeo | Q91222184 | ||
| P2093 | author name string | Brian M M Ahmer | |
| Anastasia H Potts | |||
| P2860 | cites work | Fructose-asparagine is a primary nutrient during growth of Salmonella in the inflamed intestine | Q21131360 |
| Ultrafast and memory-efficient alignment of short DNA sequences to the human genome | Q21183894 | ||
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| Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties | Q24669943 | ||
| Degradation of RNA in bacteria: comparison of mRNA and stable RNA | Q25255881 | ||
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| Regulatory principles governing Salmonella and Yersinia virulence | Q26781384 | ||
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| The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets | Q29346718 | ||
| HTSeq--a Python framework to work with high-throughput sequencing data | Q29614489 | ||
| REVIGO summarizes and visualizes long lists of gene ontology terms | Q29614817 | ||
| Identification of SoxS-regulated genes in Salmonella enterica serovar typhimurium | Q30829672 | ||
| Improved scoring of functional groups from gene expression data by decorrelating GO graph structure | Q31036410 | ||
| Enhanced trehalose production improves growth of Escherichia coli under osmotic stress | Q33218346 | ||
| Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium | Q33410820 | ||
| Control of Salmonella pathogenicity island-2 gene expression | Q33584937 | ||
| The physiological stimulus for the BarA sensor kinase. | Q33725412 | ||
| Cationic amino acid transporters and Salmonella Typhimurium ArgT collectively regulate arginine availability towards intracellular Salmonella growth | Q33769496 | ||
| A sequence-based approach for prediction of CsrA/RsmA targets in bacteria with experimental validation in Pseudomonas aeruginosa | Q33791086 | ||
| Salmonella pathogenicity islands: big virulence in small packages. | Q33878633 | ||
| SlyA regulates function of Salmonella pathogenicity island 2 (SPI-2) and expression of SPI-2-associated genes | Q33883333 | ||
| Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium | Q33924559 | ||
| Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays | Q34075213 | ||
| Energy Taxis toward Host-Derived Nitrate Supports a Salmonella Pathogenicity Island 1-Independent Mechanism of Invasion | Q37120272 | ||
| Redundant hydrogen peroxide scavengers contribute to Salmonella virulence and oxidative stress resistance. | Q37247851 | ||
| Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins. | Q37264341 | ||
| A novel CsrA titration mechanism regulates fimbrial gene expression in Salmonella typhimurium. | Q37279641 | ||
| Mechanisms of survival, responses and sources of Salmonella in low-moisture environments | Q37307063 | ||
| Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression | Q37328191 | ||
| The alternative sigma factor katF (rpoS) regulates Salmonella virulence | Q37346357 | ||
| Salmonellae interactions with host processes. | Q37357805 | ||
| A serine sensor for multicellularity in a bacterium. | Q37391493 | ||
| Cytochrome bd-Dependent Bioenergetics and Antinitrosative Defenses in Salmonella Pathogenesis | Q37530439 | ||
| Identification of a virulence locus encoding a second type III secretion system in Salmonella typhimurium | Q37698755 | ||
| Salmonella spp. survival strategies within the host gastrointestinal tract. | Q37948035 | ||
| Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. | Q38016604 | ||
| Global regulation by CsrA in Salmonella typhimurium | Q38353868 | ||
| The Pyromaniac Inside You: Salmonella Metabolism in the Host Gut. | Q38498827 | ||
| Oxygen as Acceptor. | Q38687876 | ||
| Bacterial Stress Responses during Host Infection | Q38924600 | ||
| Overcoming H-NS-mediated transcriptional silencing of horizontally acquired genes by the PhoP and SlyA proteins in Salmonella enterica | Q39323797 | ||
| The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS. | Q39332980 | ||
| Regulation of Salmonella enterica serovar typhimurium invasion genes by csrA. | Q39517248 | ||
| The Aerobic and Anaerobic Respiratory Chain of Escherichia coli and Salmonella enterica: Enzymes and Energetics | Q50431819 | ||
| Salmonella-Mediated Inflammation Eliminates Competitors for Fructose-Asparagine in the Gut. | Q54266197 | ||
| The Escherichia coli CsrB and CsrC small RNAs are strongly induced during growth in nutrient-poor medium. | Q54402937 | ||
| Membrane cyclopropane fatty acid content is a major factor in acid resistance of Escherichia coli | Q78016755 | ||
| Thioredoxins in bacteria: functions in oxidative stress response and regulation of thioredoxin genes | Q82919351 | ||
| Trehalose synthesis is induced upon exposure of Escherichia coli to cold and is essential for viability at low temperatures | Q34075334 | ||
| The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding | Q34097287 | ||
| Iron availability increases the pathogenic potential of Salmonella typhimurium and other enteric pathogens at the intestinal epithelial interface | Q34137435 | ||
| A horizontally acquired transcription factor coordinates Salmonella adaptations to host microenvironments | Q34237755 | ||
| Nutritional immunity: transition metals at the pathogen-host interface | Q34288184 | ||
| Cloning and molecular characterization of genes whose products allow Salmonella typhimurium to penetrate tissue culture cells | Q34298444 | ||
| Salmonella enterica serovar Typhimurium skills to succeed in the host: virulence and regulation | Q34336985 | ||
| Dual function of the McaS small RNA in controlling biofilm formation | Q34344239 | ||
| Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study | Q34345075 | ||
| Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants | Q34484512 | ||
| CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation of pnp Transcripts That Have Been Previously Processed by RNase III and PNPase | Q34496912 | ||
| The Escherichia coli btuE gene, encodes a glutathione peroxidase that is induced under oxidative stress conditions | Q34673995 | ||
| Parallel exploitation of diverse host nutrients enhances Salmonella virulence. | Q34697874 | ||
| Role of Salmonella Pathogenicity Island 1 protein IacP in Salmonella enterica serovar typhimurium pathogenesis | Q34740089 | ||
| The carbon storage regulator (Csr) system exerts a nutrient-specific control over central metabolism in Escherichia coli strain Nissle 1917. | Q34805340 | ||
| Glutathione transferases in bacteria. | Q34882983 | ||
| Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes | Q35020044 | ||
| Salmonella-how a metabolic generalist adopts an intracellular lifestyle during infection | Q35026100 | ||
| Circuitry linking the Csr and stringent response global regulatory systems | Q35046553 | ||
| Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD | Q35049823 | ||
| Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. | Q35052576 | ||
| Iron fortification adversely affects the gut microbiome, increases pathogen abundance and induces intestinal inflammation in Kenyan infants | Q35229129 | ||
| Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota | Q35409022 | ||
| A FRET-based DNA biosensor tracks OmpR-dependent acidification of Salmonella during macrophage infection | Q35416592 | ||
| Acidification of phagosomes containing Salmonella typhimurium in murine macrophages. | Q35506318 | ||
| Expression of Salmonella typhimurium rpoS and rpoS-dependent genes in the intracellular environment of eukaryotic cells | Q35529666 | ||
| The gene slyA of Salmonella typhimurium is required for destruction of M cells and intracellular survival but not for invasion or colonization of the murine small intestine | Q35531570 | ||
| Role of sigma factor RpoS in initial stages of Salmonella typhimurium infection. | Q35546829 | ||
| SlyA, a transcriptional regulator of Salmonella typhimurium, is required for resistance to oxidative stress and is expressed in the intracellular environment of macrophages | Q35555071 | ||
| Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates. | Q35575315 | ||
| RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium | Q35839664 | ||
| Aetiology-Specific Estimates of the Global and Regional Incidence and Mortality of Diarrhoeal Diseases Commonly Transmitted through Food | Q35859832 | ||
| Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems | Q35870339 | ||
| Evolution of pathogenicity islands of Salmonella enterica | Q35922677 | ||
| CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence | Q35949212 | ||
| Multiple factors independently regulate hilA and invasion gene expression in Salmonella enterica serovar typhimurium | Q39538569 | ||
| Cyclopropane ring formation in membrane lipids of bacteria. | Q40024302 | ||
| Salmonella SPI-2 Type III Secretion System Effectors: Molecular Mechanisms And Physiological Consequences. | Q40097249 | ||
| What the SIF Is Happening-The Role of Intracellular Salmonella-Induced Filaments | Q40101016 | ||
| The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella. | Q40136074 | ||
| The Role of the spv Genes in Salmonella Pathogenesis | Q40319960 | ||
| Host cell attachment elicits posttranscriptional regulation in infecting enteropathogenic bacteria. | Q40328880 | ||
| Timing of induction of osmotically controlled genes in Salmonella enterica Serovar Typhimurium, determined with quantitative real-time reverse transcription-PCR. | Q40715763 | ||
| Iron supplying systems of Salmonella in diagnostics, epidemiology and infection | Q40934900 | ||
| Global transcriptome and mutagenic analyses of the acid tolerance response of Salmonella enterica serovar Typhimurium. | Q40991424 | ||
| Estimates of illnesses, hospitalizations and deaths caused by major bacterial enteric pathogens in young children in the United States | Q41404343 | ||
| Regulatory components, including integration host factor, CysB and H-NS, that influence pH responses in Escherichia coli | Q41489265 | ||
| Systematic analysis of the SsrAB virulon of Salmonella enterica | Q41775111 | ||
| The Periplasmic Nitrate Reductase NapABC Supports Luminal Growth of Salmonella enterica Serovar Typhimurium during Colitis | Q41845880 | ||
| Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium | Q42326267 | ||
| Regulation of the spvR gene of the Salmonella typhimurium virulence plasmid during exponential-phase growth in intracellular salts medium and at stationary phase in L broth | Q42459435 | ||
| hilA is a novel ompR/toxR family member that activates the expression of Salmonella typhimurium invasion genes | Q42638991 | ||
| An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium | Q42774408 | ||
| HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB. | Q43044995 | ||
| CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage. | Q43208080 | ||
| Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica | Q43533379 | ||
| Ribosome profiling: new views of translation, from single codons to genome scale | Q44759418 | ||
| Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics | Q47096901 | ||
| Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. | Q47913886 | ||
| Measurement of Fructose-Asparagine Concentrations in Human and Animal Foods. | Q48133744 | ||
| Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction. | Q48194060 | ||
| Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth | Q49587782 | ||
| Annual cost of illness and quality-adjusted life year losses in the United States due to 14 foodborne pathogens | Q50023108 | ||
| Osmotic Stress | Q50053826 | ||
| The role of ferritins in the physiology of Salmonella enterica sv. Typhimurium: a unique role for ferritin B in iron-sulphur cluster repair and virulence | Q50073625 | ||
| Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. | Q50091911 | ||
| AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in Salmonella typhimurium. | Q50105717 | ||
| Effects of rpoA and cysB mutations on acid induction of biodegradative arginine decarboxylase in Escherichia coli | Q35980411 | ||
| Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella | Q35989778 | ||
| Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses | Q36002387 | ||
| Phage-mediated acquisition of a type III secreted effector protein boosts growth of salmonella by nitrate respiration | Q36029218 | ||
| Effects of nitrate respiration on expression of the Arc-controlled operons encoding succinate dehydrogenase and flavin-linked L-lactate dehydrogenase | Q36106036 | ||
| osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coli | Q36112059 | ||
| Respiration of Microbiota-Derived 1,2-propanediol Drives Salmonella Expansion during Colitis. | Q36240466 | ||
| Acylation of the Type 3 Secretion System Translocon Using a Dedicated Acyl Carrier Protein | Q36248729 | ||
| Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli | Q36287119 | ||
| Lost in translation: the influence of ribosomes on bacterial mRNA decay | Q36303663 | ||
| Salmonella typhimurium initiates murine infection by penetrating and destroying the specialized epithelial M cells of the Peyer's patches. | Q36363455 | ||
| Manipulating cellular transport and immune responses: dynamic interactions between intracellular Salmonella enterica and its host cells. | Q36447552 | ||
| The horizontally-acquired response regulator SsrB drives a Salmonella lifestyle switch by relieving biofilm silencing | Q36624596 | ||
| Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium. | Q36701362 | ||
| Formate acts as a diffusible signal to induce Salmonella invasion | Q36747272 | ||
| The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli. | Q36835470 | ||
| Identification of a Salmonella typhimurium invasion locus by selection for hyperinvasive mutants | Q36864089 | ||
| Iron metabolism at the host pathogen interface: lipocalin 2 and the pathogen-associated iroA gene cluster | Q36917365 | ||
| HilD-mediated transcriptional cross-talk between SPI-1 and SPI-2. | Q36936468 | ||
| Regulation of CsrB/C sRNA decay by EIIA(Glc) of the phosphoenolpyruvate: carbohydrate phosphotransferase system. | Q36956270 | ||
| The Salmonella-containing vacuole: moving with the times | Q36961170 | ||
| ProP is required for the survival of desiccated Salmonella enterica serovar typhimurium cells on a stainless steel surface | Q36970460 | ||
| Low-pH rescue of acid-sensitive Salmonella enterica Serovar Typhi Strains by a Rhamnose-regulated arginine decarboxylase system | Q36970553 | ||
| Salmonellae interplay with host cells | Q37008201 | ||
| Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion | Q37080879 | ||
| A dual-signal regulatory circuit activates transcription of a set of divergent operons in Salmonella typhimurium | Q37081562 | ||
| Probiotic bacteria reduce salmonella typhimurium intestinal colonization by competing for iron | Q37118020 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | limma | Q112236343 |
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | transcriptomics | Q28946449 |
| P304 | page(s) | e0211430 | |
| P577 | publication date | 2019-01-25 | |
| P1433 | published in | PLOS One | Q564954 |
| P1476 | title | Role of CsrA in stress responses and metabolism important for Salmonella virulence revealed by integrated transcriptomics | |
| P478 | volume | 14 |
| Q92459626 | Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli |
| Q91893963 | Rugose Morphotype in Salmonella Typhimurium and Salmonella Heidelberg Induced by Sequential Exposure to Subinhibitory Sodium Hypochlorite Aids in Biofilm Tolerance to Lethal Sodium Hypochlorite on Polystyrene and Stainless Steel Surfaces |
| Q92715663 | Salmonella Pathogenicity Island 1 (SPI-1) and Its Complex Regulatory Network |
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