| scholarly article | Q13442814 |
| P50 | author | Suse Broyde | Q41508315 |
| Chryssostomos Chatgilialoglu | Q43054315 | ||
| Vladimir Shafirovich | Q43191092 | ||
| Michael A Terzidis | Q57120394 | ||
| Annalisa Masi | Q57310305 | ||
| P2093 | author name string | Zhi Liu | |
| Nicholas E Geacintov | |||
| Shantu Amin | |||
| Konstantin Kropachev | |||
| Marina Kolbanovskiy | |||
| Alexander Dadali | |||
| Yuquin Cai | |||
| P2860 | cites work | Hydroxyl radical footprinting | Q68272149 |
| Solution conformation of the (+)-cis-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove | Q72696419 | ||
| Effects of histone acetylation on the equilibrium accessibility of nucleosomal DNA target sites | Q73710483 | ||
| The oxidative DNA lesion 8,5'-(S)-cyclo-2'-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cells | Q73763148 | ||
| New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning | Q74352513 | ||
| Synthesis and characterization of oligonucleotides containing 5',8-cyclopurine 2'-deoxyribonucleosides: (5'R)-5',8-cyclo-2'-deoxyadenosine, (5'S)-5',8-cyclo-2'-deoxyguanosine, and (5'R)-5',8-cyclo-2'-deoxyguanosine | Q77752837 | ||
| Sequence-dependent nucleosome structure and stability variations detected by Förster resonance energy transfer | Q79705607 | ||
| Nucleosomal structure of undamaged DNA regions suppresses the non-specific DNA binding of the XPC complex | Q81299914 | ||
| Footprinting protein-DNA complexes using the hydroxyl radical | Q81437864 | ||
| Assaying for the dual incisions of nucleotide excision repair using DNA with a lesion at a specific site | Q83285394 | ||
| Implication of posttranslational histone modifications in nucleotide excision repair | Q26823794 | ||
| Post-translational modifications of histones that influence nucleosome dynamics | Q26852536 | ||
| Crystal structures of nucleosome core particles containing the '601' strong positioning sequence | Q27664208 | ||
| Structure and Stability of Duplex DNA Containing (5′ S )-5′,8-Cyclo-2′-deoxyadenosine: An Oxidatively Generated Lesion Repaired by NER | Q27671744 | ||
| Structure of (5′ S )-8,5′-Cyclo-2′-deoxyguanosine in DNA | Q27675728 | ||
| Structures of (5′ S )-8,5′-Cyclo-2′-deoxyguanosine Mismatched with dA or dT | Q27677116 | ||
| Nucleosome disruption by DNA ligase III-XRCC1 promotes efficient base excision repair | Q28248511 | ||
| A multistep damage recognition mechanism for global genomic nucleotide excision repair | Q28359842 | ||
| ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes | Q28362241 | ||
| The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions | Q28757533 | ||
| Structural basis for the recognition of diastereomeric 5',8-cyclo-2'-deoxypurine lesions by the human nucleotide excision repair system | Q30579562 | ||
| The SWI/SNF chromatin-remodeling factor stimulates repair by human excision nuclease in the mononucleosome core particle | Q30846029 | ||
| Removal of oxygen free-radical-induced 5',8-purine cyclodeoxynucleosides from DNA by the nucleotide excision-repair pathway in human cells | Q30856746 | ||
| DNA damage in the nucleosome core is refractory to repair by human excision nuclease | Q30969773 | ||
| Assembly, subunit composition, and footprint of human DNA repair excision nuclease | Q32061670 | ||
| Sequential recruitment of the repair factors during NER: the role of XPG in initiating the resynthesis step. | Q33310274 | ||
| The 8,5'-cyclopurine-2'-deoxynucleosides: candidate neurodegenerative DNA lesions in xeroderma pigmentosum, and unique probes of transcription and nucleotide excision repair | Q33554002 | ||
| Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme | Q33740808 | ||
| Base excision repair: a critical player in many games | Q33908163 | ||
| Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes | Q33934039 | ||
| DNA repair of a single UV photoproduct in a designed nucleosome | Q33942985 | ||
| Impact of abasic site orientation within nucleosomes on human APE1 endonuclease activity. | Q33956975 | ||
| Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion | Q34071376 | ||
| UV damage in DNA promotes nucleosome unwrapping | Q34074380 | ||
| Base Sequence Context Effects on Nucleotide Excision Repair | Q34143686 | ||
| Reconstitution of nucleosome core particles from recombinant histones and DNA. | Q34296889 | ||
| Nucleosomes facilitate their own invasion | Q34333992 | ||
| Understanding nucleotide excision repair and its roles in cancer and ageing. | Q34426055 | ||
| Quantification of oxidative DNA lesions in tissues of Long-Evans Cinnamon rats by capillary high-performance liquid chromatography-tandem mass spectrometry coupled with stable isotope-dilution method | Q34669399 | ||
| Nucleosome accessibility governed by the dimer/tetramer interface | Q34865147 | ||
| (5'S)-8,5'-cyclo-2'-deoxyguanosine is a strong block to replication, a potent pol V-dependent mutagenic lesion, and is inefficiently repaired in Escherichia coli | Q34974947 | ||
| Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes | Q35145790 | ||
| Fluorescence resonance energy transfer and nucleic acids | Q35401949 | ||
| Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro | Q35540743 | ||
| Measurement of histone-DNA interaction free energy in nucleosomes | Q35708228 | ||
| Reactive species and DNA damage in chronic inflammation: reconciling chemical mechanisms and biological fates | Q35906815 | ||
| Substrate spectrum of human excinuclease: repair of abasic sites, methylated bases, mismatches, and bulky adducts | Q35967782 | ||
| Nucleosome packaging and nucleosome positioning of genomic DNA | Q35990971 | ||
| Nature and nurture - lessons from chemical carcinogenesis | Q36014330 | ||
| DNA damage can alter the stability of nucleosomes: effects are dependent on damage type | Q36034321 | ||
| The oxidative DNA lesions 8,5'-cyclopurines accumulate with aging in a tissue-specific manner | Q36103490 | ||
| H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization | Q36106924 | ||
| Nucleotide excision repair in chromatin and the right of entry | Q36165675 | ||
| Accurate and efficient bypass of 8,5'-cyclopurine-2'-deoxynucleosides by human and yeast DNA polymerase η. | Q36177279 | ||
| Chronic epithelial NF-κB activation accelerates APC loss and intestinal tumor initiation through iNOS up-regulation | Q36212747 | ||
| Molecular mechanisms of mammalian global genome nucleotide excision repair. | Q36389623 | ||
| A quantitative assay for assessing the effects of DNA lesions on transcription | Q36431367 | ||
| An ultraviolet-radiation-independent pathway to melanoma carcinogenesis in the red hair/fair skin background | Q36464502 | ||
| Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes | Q36573952 | ||
| The structural location of DNA lesions in nucleosome core particles determines accessibility by base excision repair enzymes | Q36832725 | ||
| Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA | Q36868866 | ||
| Differences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes | Q36887275 | ||
| 8,5'-Cyclopurine-2'-deoxynucleosides in DNA: mechanisms of formation, measurement, repair and biological effects | Q37207813 | ||
| Translesion synthesis of 8,5'-cyclopurine-2'-deoxynucleosides by DNA polymerases η, ι, and ζ. | Q37213767 | ||
| Accumulation of (5'S)-8,5'-cyclo-2'-deoxyadenosine in organs of Cockayne syndrome complementation group B gene knockout mice | Q37219471 | ||
| Robust methods for purification of histones from cultured mammalian cells with the preservation of their native modifications. | Q37235400 | ||
| The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions | Q37281223 | ||
| Tumorigenicity of the optical enantiomers of the diastereomeric benzo[a]pyrene 7,8-diol-9,10-epoxides in newborn mice: exceptional activity of (+)-7beta,8alpha-dihydroxy-9alpha,10alpha-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene | Q37593926 | ||
| Mutagenicity and genotoxicity of (5'S)-8,5'-cyclo-2'-deoxyadenosine in Escherichia coli and replication of (5'S)-8,5'-cyclopurine-2'-deoxynucleosides in vitro by DNA polymerase IV, exo-free Klenow fragment, and Dpo4. | Q37634395 | ||
| Histone H3 lysine 14 (H3K14) acetylation facilitates DNA repair in a positioned nucleosome by stabilizing the binding of the chromatin Remodeler RSC (Remodels Structure of Chromatin) | Q37653281 | ||
| Prime, repair, restore: the active role of chromatin in the DNA damage response | Q38022970 | ||
| Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surface | Q38320208 | ||
| Repair efficiency of (5'S)-8,5'-cyclo-2'-deoxyguanosine and (5'S)-8,5'-cyclo-2'-deoxyadenosine depends on the complementary base | Q38320847 | ||
| Preparation and isolation of adducts in high yield derived from the binding of two benzo[a]pyrene-7,8-dihydroxy-9,10-oxide stereoisomers to the oligonucleotide d(ATATGTATA). | Q38339471 | ||
| Base excision repair in chromatin: Insights from reconstituted systems | Q38594076 | ||
| Chromatin associated mechanisms in base excision repair - nucleosome remodeling and DNA transcription, two key players | Q39051988 | ||
| Effect of damage type on stimulation of human excision nuclease by SWI/SNF chromatin remodeling factor | Q39756598 | ||
| Accumulation of oxidatively induced DNA damage in human breast cancer cell lines following treatment with hydrogen peroxide. | Q40119977 | ||
| Lymphoblasts of women with BRCA1 mutations are deficient in cellular repair of 8,5'-Cyclopurine-2'-deoxynucleosides and 8-hydroxy-2'-deoxyguanosine | Q40173287 | ||
| Preparation of nucleosome core particle from recombinant histones | Q40947701 | ||
| Overproduction, purification, and characterization of the XPC subunit of the human DNA repair excision nuclease | Q41175756 | ||
| Repair-Resistant DNA Lesions | Q41508281 | ||
| Initiation of base excision repair of oxidative lesions in nucleosomes by the human, bifunctional DNA glycosylase NTH1. | Q41886603 | ||
| Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics | Q42029581 | ||
| NF-κB inhibition delays DNA damage-induced senescence and aging in mice | Q42220488 | ||
| Histone- and DNA sequence-dependent stability of nucleosomes studied by single-pair FRET. | Q42284698 | ||
| Identification and quantification of (5'R)- and (5'S)-8,5'-cyclo-2'-deoxyadenosines in human urine as putative biomarkers of oxidatively induced damage to DNA. | Q43062791 | ||
| Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair | Q43113788 | ||
| Structural variability of nucleosomes detected by single-pair Förster resonance energy transfer: histone acetylation, sequence variation, and salt effects | Q44657720 | ||
| (5'S)- and (5'R)-5',8-cyclo-2'-deoxyguanosine: mechanistic insights on the 2'-deoxyguanosin-5'-yl radical cyclization | Q46911049 | ||
| Human OGG1 activity in nucleosomes is facilitated by transient unwrapping of DNA and is influenced by the local histone environment. | Q47822517 | ||
| Intrinsic promoter nucleosome stability/dynamics variations support a novel targeting mechanism | Q47991793 | ||
| Human Oxoguanine Glycosylase 1 Removes Solution Accessible 8-Oxo-7,8-dihydroguanine Lesions from Globally Substituted Nucleosomes Except in the Dyad Region | Q48227376 | ||
| Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[a]pyrenyl ring into the helix and displacement of the modified deoxyguanosine. | Q51653035 | ||
| Nucleotide excision repair from site-specifically platinum-modified nucleosomes. | Q51836720 | ||
| The relationship between benzo[a]pyrene-induced mutagenesis and carcinogenesis in repair-deficient Cockayne syndrome group B mice. | Q53404478 | ||
| Single-pair fluorescence resonance energy transfer of nucleosomes in free diffusion: optimizing stability and resolution of subpopulations. | Q53548214 | ||
| Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts. | Q55060652 | ||
| C5'-adenosinyl radical cyclization. A stereochemical investigation | Q56997985 | ||
| DNA adducts from carcinogenic and noncarcinogenic enantiomers of benzo[a]pyrene dihydrodiol epoxide | Q57224235 | ||
| DNA Damage Products (5′R)- and (5′S)-8,5′-Cyclo-2′-deoxyadenosines as Potential Biomarkers in Human Urine for Atherosclerosis | Q60585015 | ||
| Binding of Nenzo[ a ]pyrene 7,8-Diol-9,10-Epoxides to DNA, RNA, and Protein of Mouse Skin Occurs with High Stereoselectivity | Q67258357 | ||
| Benzo(a)pyrene diol epoxides as intermediates in nucleic acid binding in vitro and in vivo | Q67799938 | ||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 561-574 | |
| P577 | publication date | 2019-01-07 | |
| P1433 | published in | Biochemistry | Q764876 |
| P1476 | title | Nucleotide Excision Repair and Impact of Site-Specific 5',8-Cyclopurine and Bulky DNA Lesions on the Physical Properties of Nucleosomes | |
| P478 | volume | 58 |
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