Quanfima: An open source Python package for automated fiber analysis of biomaterials

scientific article published on 11 April 2019

Quanfima: An open source Python package for automated fiber analysis of biomaterials is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1371/JOURNAL.PONE.0215137
P932PMC publication ID6459545
P698PubMed publication ID30973910

P50authorVenera WeinhardtQ58266884
Roman SurmenevQ82722649
Roman ShkarinQ93026135
P2093author name stringTilo Baumbach
Ralf Mikut
Maria A Surmeneva
Angelica Cecilia
Svetlana Shkarina
Andrei Shkarin
P2860cites workMatplotlib: A 2D Graphics EnvironmentQ17278583
scikit-image: image processing in PythonQ22442806
NIH Image to ImageJ: 25 years of image analysisQ23319322
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Review collagen-based biomaterials for wound healingQ26852717
The influence of fiber diameter of electrospun substrates on neural stem cell differentiation and proliferationQ28299395
FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy imagesQ28364523
DiameterJ: A validated open source nanofiber diameter measurement toolQ28364792
Interactive notebooks: Sharing the codeQ28851715
In vivo X-ray cine-tomography for tracking morphological dynamics.Q30574590
Rapid quantification of pixel-wise fiber orientation data in micrographs.Q30611633
Aligned biodegradable nanofibrous structure: a potential scaffold for blood vessel engineeringQ33194884
An automated image processing method to quantify collagen fibre organization within cutaneous scar tissueQ34899566
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Biodegradable and bioactive porous polymer/inorganic composite scaffolds for bone tissue engineering.Q36407629
Application potential of bone marrow mesenchymal stem cell (BMSCs) based tissue-engineering for spinal cord defect repair in rat fetuses with spina bifida apertaQ36599535
Modern biomaterials: a review - bulk properties and implications of surface modificationsQ36795346
Design strategies of tissue engineering scaffolds with controlled fiber orientationQ36828786
Measuring fiber alignment in electrospun scaffolds: a user's guide to the 2D fast Fourier transform approachQ37141358
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A review of: application of synthetic scaffold in tissue engineering heart valvesQ38314788
Optimizing structural and mechanical properties of cryogel scaffolds for use in prostate cancer cell culturingQ38725689
Fully automated, quantitative, noninvasive assessment of collagen fiber content and organization in thick collagen gelsQ38760272
Transforms and Operators for Directional Bioimage Analysis: A Survey.Q38840292
Automated quantification of three-dimensional organization of fiber-like structures in biological tissuesQ39134148
The role of aligned polymer fiber-based constructs in the bridging of long peripheral nerve gapsQ40879793
Measurement of orientation and distribution of cellular alignment and cytoskeletal organizationQ41712715
Characterization of the complete fiber network topology of planar fibrous tissues and scaffoldsQ42702076
Effect of fiber diameter on spreading, proliferation, and differentiation of osteoblastic cells on electrospun poly(lactic acid) substratesQ42812239
Role of fiber diameter in adhesion and proliferation of NIH 3T3 fibroblast on electrospun polycaprolactone scaffoldsQ42828107
Analyzing microtomography data with Python and the scikit-image library.Q45943860
Role of nanofibrous poly(caprolactone) scaffolds in human mesenchymal stem cell attachment and spreading for in vitro bone tissue engineering--response to osteogenic regulatorsQ46274337
Novel self-gelling injectable hydrogel/alpha-tricalcium phosphate composites for bone regeneration: Physiochemical and microcomputer tomographical characterizationQ47422625
Effect of polyvinylidene fluoride electrospun fiber orientation on neural stem cell differentiation.Q48544863
Gauging low-dose X-ray phase-contrast imaging at a single and large propagation distance.Q50706397
Morphology and characterization of 3D micro-porous structured chitosan scaffolds for tissue engineering.Q51046697
Interstitial fluid flow induces myofibroblast differentiation and collagen alignment in vitro.Q51348410
Interconnectivity analysis of supercritical CO₂-foamed scaffolds.Q51661728
Novel injectable gellan gum hydrogel composites incorporating Zn- and Sr-enriched bioactive glass microparticles: High-resolution X-ray microcomputed tomography, antibacterial and in vitro testing.Q52681674
Electrospun nanofibrous structure: a novel scaffold for tissue engineering.Q53693531
3D biodegradable scaffolds of polycaprolactone with silicate-containing hydroxyapatite microparticles for bone tissue engineering: high-resolution tomography and in vitro study.Q55473206
The NumPy Array: A Structure for Efficient Numerical ComputationQ57317251
Automatic Determination of Fiber-Length Distribution in Composite Material Using 3D CT DataQ59254306
Python for Scientific ComputingQ62058750
Non-destructive automatic determination of aspect ratio and cross-sectional properties of fibresQ109744363
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesPythonQ28865
NumPyQ197520
scikit-learnQ1026367
Jupyter notebook fileQ70357595
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectPythonQ28865
open-source softwareQ1130645
open sourceQ39162
Python packageQ29642950
P6104maintained by WikiProjectWikiProject SoftwareQ15659621
P304page(s)e0215137
P577publication date2019-04-11
P1433published inPLOS OneQ564954
P1476titleQuanfima: An open source Python package for automated fiber analysis of biomaterials
P478volume14

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cites work (P2860)
Q98161903GPU-accelerated ray-casting for 3D fiber orientation analysis
Q98389359The Influence of the Hybridization Process on the Mechanical and Thermal Properties of Polyoxymethylene (POM) Composites with the Use of a Novel Sustainable Reinforcing System Based on Biocarbon and Basalt Fiber (BC/BF)

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