| P2093 | author name string | Matthew B Sullivan | |
| | Michael J Allen | |
| | Ben Temperton | |
| | Karen Moore | |
| | Ann C Gregory | |
| | Lauren Chittick | |
| | Natalie Solonenko | |
| | Joanna Warwick-Dugdale | |
| P2860 | cites work | Expanding the marine virosphere using metagenomics | Q21092406 |
| | Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique' | Q21283761 |
| | BLAST+: architecture and applications | Q21284368 |
| | Protein length in eukaryotic and prokaryotic proteomes | Q24529556 |
| | Mathematical model for studying genetic variation in terms of restriction endonucleases | Q24564849 |
| | Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method | Q24630576 |
| | Viromes, not gene markers, for studying double-stranded DNA virus communities | Q27028192 |
| | The new statistics: why and how. | Q51142198 |
| | SAR11 Bacteria: The Most Abundant Plankton in the Oceans. | Q51788451 |
| | Using MUMmer to identify similar regions in large sequence sets. | Q51888028 |
| | A comprehensive and quantitative exploration of thousands of viral genomes. | Q54240653 |
| | Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome | Q58695715 |
| | Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean | Q59352407 |
| | Errors in long-read assemblies can critically affect protein prediction | Q64443894 |
| | Reply to 'Errors in long-read assemblies can critically affect protein prediction' | Q91168687 |
| | Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. | Q37577364 |
| | Metagenomics: microbial diversity through a scratched lens | Q38029439 |
| | Viral metabolic reprogramming in marine ecosystems. | Q38810797 |
| | metaSPAdes: a new versatile metagenomic assembler | Q38905159 |
| | Origins and challenges of viral dark matter. | Q39133379 |
| | Ménage à trois in the human gut: interactions between host, bacteria and phages | Q39276552 |
| | Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses | Q39365291 |
| | An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses | Q39518882 |
| | Regulation of average length of complex PCR product | Q39728974 |
| | Metabolic reprogramming by viruses in the sunlit and dark ocean | Q40594225 |
| | Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis. | Q41356619 |
| | MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island | Q41611086 |
| | Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity | Q41694480 |
| | Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture | Q41771722 |
| | Evidence for metaviromic islands in marine phages | Q41905711 |
| | Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks | Q41968616 |
| | Genome of Klebsiella sp.-infecting bacteriophage vB_KleM_RaK2. | Q42064307 |
| | Supersize me: Cronobacter sakazakii phage GAP32. | Q42207066 |
| | Viral communities of the human gut: metagenomic analysis of composition and dynamics | Q42281233 |
| | WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs | Q42696856 |
| | A simple and efficient method for concentration of ocean viruses by chemical flocculation | Q42726332 |
| | Bacteriophage Distributions and Temporal Variability in the Ocean's Interior | Q46252443 |
| | Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes | Q46297091 |
| | A communal catalogue reveals Earth's multiscale microbial diversity | Q46349678 |
| | FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data | Q47552694 |
| | The 'Neglected' Soil Virome - Potential Role and Impact | Q47557536 |
| | Nanopore sequencing and assembly of a human genome with ultra-long reads. | Q50066036 |
| | Pitfalls of haplotype phasing from amplicon-based long-read sequencing | Q27345200 |
| | Fast gapped-read alignment with Bowtie 2 | Q27860699 |
| | Ecology of prokaryotic viruses | Q28258560 |
| | Viruses in the sea | Q28272293 |
| | Towards quantitative viromics for both double-stranded and single-stranded DNA viruses | Q28585976 |
| | Clinical and biological insights from viral genome sequencing | Q28595162 |
| | Marine viruses--major players in the global ecosystem | Q29616822 |
| | Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics | Q30454554 |
| | Improved data analysis for the MinION nanopore sequencer | Q30893625 |
| | The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences | Q31036204 |
| | Microbial diversity and function in soil: from genes to ecosystems | Q31073757 |
| | Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data | Q31092987 |
| | One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly | Q33359571 |
| | Seasonality and vertical structure of microbial communities in an ocean gyre | Q33459805 |
| | Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation | Q33622593 |
| | vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria | Q33642282 |
| | Single-virus genomics reveals hidden cosmopolitan and abundant viruses | Q33850538 |
| | Abundant SAR11 viruses in the ocean. | Q34327674 |
| | A complete bacterial genome assembled de novo using only nanopore sequencing data | Q34480779 |
| | Genomic islands and the ecology and evolution of Prochlorococcus. | Q34504656 |
| | Near-optimal probabilistic RNA-seq quantification | Q34520743 |
| | A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes | Q34580339 |
| | The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology | Q34612034 |
| | MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes | Q34862099 |
| | Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. | Q35209768 |
| | Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement | Q35436695 |
| | Ocean plankton. Patterns and ecological drivers of ocean viral communities | Q35638928 |
| | VirSorter: mining viral signal from microbial genomic data | Q35650782 |
| | An intron in the thymidylate synthase gene of Bacillus bacteriophage beta 22: evidence for independent evolution of a gene, its group I intron, and the intron open reading frame | Q35928794 |
| | Genomes of Abundant and Widespread Viruses from the Deep Ocean | Q36086589 |
| | Intervening sequence in the thymidylate synthase gene of bacteriophage T4 | Q36260854 |
| | Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads | Q36395773 |
| | Detecting overlapping protein complexes in protein-protein interaction networks | Q36528169 |
| | The virocell concept and environmental microbiology | Q36560700 |
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | MUMmer | Q6719063 |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | metagenomics | Q903778 |
| | virome | Q24977348 |
| P304 | page(s) | e6800 | |
| P577 | publication date | 2019-01-01 | |
| P1433 | published in | PeerJ | Q2000010 |
| P1476 | title | Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands | |
| P478 | volume | 7 | |