DNA bending is an important component of site-specific recognition by the TATA binding protein

scientific article published on 01 July 1995

DNA bending is an important component of site-specific recognition by the TATA binding protein is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1006/JMBI.1995.0388
P698PubMed publication ID7616566

P2093author name stringB C Hoopes
D K Hawley
D B Starr
P433issue4
P304page(s)434-446
P577publication date1995-07-01
P1433published inJournal of Molecular BiologyQ925779
P1476titleDNA bending is an important component of site-specific recognition by the TATA binding protein
P478volume250

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cites work (P2860)
Q34443389A TATA binding protein mutant with increased affinity for DNA directs transcription from a reversed TATA sequence in vivo
Q24811073A highly distinctive mechanical property found in the majority of human promoters and its transcriptional relevance
Q24324110A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains
Q24793398A precise DNA bend angle is essential for the function of the phage phi29 transcriptional regulator
Q77763072A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition
Q42447714A weak TATA box is a prerequisite for glucocorticoid-dependent repression of the osteocalcin gene
Q36357060AF4 uses the SL1 components of RNAP1 machinery to initiate MLL fusion- and AEP-dependent transcription
Q50152943CTCF-Induced Circular DNA Complexes Observed by Atomic Force Microscopy
Q25255716Changes in DNA bending and flexing due to tethered cations detected by fluorescence resonance energy transfer
Q35588772Cloning and characterization of the human integrin β6 gene promoter
Q34184319Comparison of the effect of water release on the interaction of the Saccharomyces cerevisiae TATA binding protein (TBP) with "TATA Box" sequences composed of adenosine or inosine.
Q85888213Contribution of phenylalanine side chain intercalation to the TATA-box binding protein-DNA interaction: molecular dynamics and dispersion-corrected density functional theory studies
Q40404840Core promoter elements of eukaryotic genes have a highly distinctive mechanical property
Q64379975DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent
Q41613194DNA recognition and bending
Q34301632Differences in local genomic context of bound and unbound motifs.
Q33907134Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein
Q64382615Expression and purification of the RNA polymerase III transcription specificity factor IIIB70 from Saccharomyces cerevisiae and its cooperative binding with TATA-binding protein
Q36567479Functional dissection of the B" component of RNA polymerase III transcription factor IIIB: a scaffolding protein with multiple roles in assembly and initiation of transcription
Q37255786How motif environment influences transcription factor search dynamics: Finding a needle in a haystack
Q35080649Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters
Q58065483Implication of 5'-flanking sequence elements in expression of a plant tRNA(Leu) gene
Q41647351Inhibition of Ets-1 DNA binding and ternary complex formation between Ets-1, NF-kappaB, and DNA by a designed DNA-binding ligand
Q39695897Interdependent interactions between TFIIB, TATA binding protein, and DNA
Q35294264Mesoscopic model and free energy landscape for protein-DNA binding sites: analysis of cyanobacterial promoters
Q24649912Minimal components of the RNA polymerase II transcription apparatus determine the consensus TATA box
Q35023850Minor groove deformability of DNA: a molecular dynamics free energy simulation study
Q42796601Mutations on the DNA binding surface of TBP discriminate between yeast TATA and TATA-less gene transcription.
Q47854853Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement
Q41772110Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism
Q22003968Novel cofactors and TFIIA mediate functional core promoter selectivity by the human TAFII150-containing TFIID complex
Q33782394Overexpression of C/EBPbeta represses human papillomavirus type 18 upstream regulatory region activity in HeLa cells by interfering with the binding of TATA-binding protein
Q40022324Prebending the estrogen response element destabilizes binding of the estrogen receptor DNA binding domain
Q39652879Prediction of fine-tuned promoter activity from DNA sequence
Q47829612Preinitation complex assembly: potentially a bumpy path.
Q57384362Probing the microscopic flexibility of DNA from melting temperatures
Q33943193Promoter of the gene encoding the 16 kDa DNA-binding and apoptosis-inducing C1D protein
Q41745903Purification and enzymic properties of Mot1 ATPase, a regulator of basal transcription in the yeast Saccharomyces cerevisiae
Q24614755RNA polymerase II transcription initiation: a structural view
Q54528608Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter.
Q86504064Role of indirect readout mechanism in TATA box binding protein-DNA interaction
Q34243185Role of microscopic flexibility in tightly curved DNA.
Q34548835SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition
Q34169369Selective binding of the TATA box-binding protein to the TATA box-containing promoter: analysis of structural and energetic factors
Q38335938Sequence-dependent dynamics of TATA-Box binding sites
Q36553183Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics
Q33958845Spatial organization of the core region of yeast TFIIIB-DNA complexes
Q30477147Stepwise bending of DNA by a single TATA-box binding protein.
Q27620828TATA element recognition by the TATA box-binding protein has been conserved throughout evolution
Q39451080TATA-Binding protein-TATA interaction is a key determinant of differential transcription of silkworm constitutive and silk gland-specific tRNA(Ala) genes
Q36561832TATA-box DNA binding activity and subunit composition for RNA polymerase III transcription factor IIIB from Xenopus laevis
Q46145585TATA-flanking sequences influence the rate and stability of TATA-binding protein and TFIIB binding
Q25257046TBP flanking sequences: asymmetry of binding, long-range effects and consensus sequences
Q39723706TFIID (TBP) stabilizes the binding of MyoD to its DNA site at the promoter and MyoD facilitates the association of TFIIB with the preinitiation complex
Q35130533The Saccharomyces cerevisiae RNA polymerase III recruitment factor subunits Brf1 and Bdp1 impose a strict sequence preference for the downstream half of the TATA box.
Q41026061The TATA box binding protein.
Q64382164The TATA element and its context affect the cooperative interaction of TATA-binding protein with the TFIIB-related factor, TFIIIB70
Q41159597The TATA motif is a target for efficient transcriptional activation and nerve growth factor induction of the peripherin gene
Q37013896The c-myc promoter: still MysterY and challenge
Q42719830The conformational state of the nucleosome entry-exit site modulates TATA box-specific TBP binding
Q74009630The stability of the TFIIA-TBP-DNA complex is dependent on the sequence of the TATAAA element
Q30326384The structure of the nuclear factor-kappaB protein-DNA complex varies with DNA-binding site sequence.
Q44061142The transcriptional activator GAL4-VP16 regulates the intra-molecular interactions of the TATA-binding protein
Q34521160The vasopressin gene non-canonical Hogness box: effect on protein binding and promoter function.
Q39698178Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription
Q40022632Transcription reinitiation rate: a special role for the TATA box.
Q35892506cis elements that contribute to geminivirus transcriptional regulation and the efficiency of DNA replication

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