Sequence-dependent dynamics of TATA-Box binding sites

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Sequence-dependent dynamics of TATA-Box binding sites is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/S0006-3495(98)77521-6
P932PMC publication ID1299706
P698PubMed publication ID9649394

P2093author name stringLavery R
Flatters D
P2860cites workAnisotropic flexibility of DNA and the nucleosomal structureQ24633278
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Local DNA stretching mimics the distortion caused by the TATA box-binding proteinQ36073940
Helix geometry, hydration, and G.A mismatch in a B-DNA decamerQ36447073
Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitroQ36718713
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA moleculesQ36798786
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Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.Q39716252
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Statistical analysis of DNA duplex structural featuresQ46518982
An all atom force field for simulations of proteins and nucleic acidsQ46625508
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A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic MoleculesQ55918670
Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systemsQ56750591
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B-DNA twisting correlates with base-pair morphology.Q64890640
Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvatureQ68045082
The unusual conformation adopted by the adenine tracts in kinetoplast DNAQ70169579
A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding proteinQ70865544
DNA bending is an important component of site-specific recognition by the TATA binding proteinQ71896357
Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structureQ72915628
Conformational properties of the TATA-box binding sequence of DNAQ73441798
Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydrationQ73770081
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)372-381
P577publication date1998-07-01
P1433published inBiophysical JournalQ2032955
P1476titleSequence-dependent dynamics of TATA-Box binding sites
P478volume75

Reverse relations

cites work (P2860)
Q34561394Ab initio conformational analysis of nucleic acid components: intrinsic energetic contributions to nucleic acid structure and dynamics
Q36542390Affinity and competition for TBP are molecular determinants of gene expression noise
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Q34172857Binding mechanisms of TATA box-binding proteins: DNA kinking is stabilized by specific hydrogen bonds
Q37231785Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.
Q41062049Candidate SNP Markers of Familial and Sporadic Alzheimer's Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters
Q36760451Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters
Q45357644Changes in thermodynamic properties of DNA base pairs in protein-DNA recognition
Q37519218DNA dynamically directs its own transcription initiation
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Q42179348How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter
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Q34622498Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes

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