| scholarly article | Q13442814 |
| P2093 | author name string | R E Dickerson | |
| A J Berk | |||
| I Baikalov | |||
| P M Leiberman | |||
| T K Chiu | |||
| Z S Juo | |||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 239-54 | |
| P577 | publication date | 1996-08-16 | |
| P1433 | published in | Journal of Molecular Biology | Q925779 |
| P1476 | title | How proteins recognize the TATA box | |
| P478 | volume | 261 |
| Q24674491 | 3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy |
| Q34443389 | A TATA binding protein mutant with increased affinity for DNA directs transcription from a reversed TATA sequence in vivo |
| Q42264111 | A flexible integrative approach based on random forest improves prediction of transcription factor binding sites |
| Q39581510 | A functionally distinct TATA box required for late progression through the Epstein-Barr virus life cycle. |
| Q51164609 | A novel stable RNA pentaloop that interacts specifically with a motif peptide of lambda-N protein. |
| Q27936812 | A post-recruitment function for the RNA polymerase III transcription-initiation factor IIIB |
| Q41622531 | A protein-mediated mechanism for the DNA sequence-specific action of topoisomerase II poisons. |
| Q39448411 | A region within the RAP74 subunit of human transcription factor IIF is critical for initiation but dispensable for complex assembly |
| Q77763072 | A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition |
| Q42435929 | A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members |
| Q38358615 | A single 8,5'-cyclo-2'-deoxyadenosine lesion in a TATA box prevents binding of the TATA binding protein and strongly reduces transcription in vivo |
| Q34328192 | A single-stranded promoter for RNA polymerase III. |
| Q33566434 | A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. |
| Q30329286 | ADAPT: a molecular mechanics approach for studying the structural properties of long DNA sequences. |
| Q47949245 | AT‐Specific DNA Binding of Binuclear Ruthenium Complexes at the Border of Threading Intercalation |
| Q34592533 | An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding protein |
| Q36357296 | Antiangiogenic platinum through glycan targeting. |
| Q38294228 | Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics. |
| Q22066184 | Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium |
| Q91386644 | Barley grain (1,3;1,4)-β-glucan content: effects of transcript and sequence variation in genes encoding the corresponding synthase and endohydrolase enzymes |
| Q33707223 | Bidirectional binding of the TATA box binding protein to the TATA box |
| Q34172857 | Binding mechanisms of TATA box-binding proteins: DNA kinking is stabilized by specific hydrogen bonds |
| Q25255716 | Changes in DNA bending and flexing due to tethered cations detected by fluorescence resonance energy transfer |
| Q24817148 | Characterization of the bisintercalative DNA binding mode of a bifunctional platinum-acridine agent |
| Q33183734 | Circular dichroism and thermal melting differentiation of Hoechst 33258 binding to the curved (A(4)T(4)) and straight (T(4)A(4)) DNA sequences |
| Q44066738 | Circular dichroism study of the irreversibility of conformational changes induced by polyamine-linked dinuclear platinum compounds |
| Q38339920 | Cisplatin- and UV-damaged DNA lure the basal transcription factor TFIID/TBP. |
| Q34348474 | Cisplatin: from DNA damage to cancer chemotherapy. |
| Q38294351 | Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters |
| Q35176291 | Computational approaches to identify promoters and cis-regulatory elements in plant genomes |
| Q52553685 | Conformational changes of DNA induced by binding of Chironomus high mobility group protein 1a (cHMG1a). Regions flanking an HMG1 box domain do not influence the bend angle of the DNA. |
| Q40778533 | Conserved features of complexes of TATA-box binding proteins with DNA. |
| Q85888213 | Contribution of phenylalanine side chain intercalation to the TATA-box binding protein-DNA interaction: molecular dynamics and dispersion-corrected density functional theory studies |
| Q40404840 | Core promoter elements of eukaryotic genes have a highly distinctive mechanical property |
| Q27640838 | Crystal structure of a transcription factor IIIB core interface ternary complex |
| Q27638194 | Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing |
| Q27633373 | Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex |
| Q47742690 | DNA Sequence Recognition of a Cross-Linked Polyamide: CD Studies, Footprinting and Effects on the Activity of DNA Gyrase |
| Q58010457 | DNA Structure Changes Coupled to Protein Binding |
| Q39723537 | DNA bending: the prevalence of kinkiness and the virtues of normality |
| Q64379975 | DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent |
| Q47282788 | DNA binding provides a molecular strap activating the adenovirus proteinase |
| Q41613194 | DNA recognition and bending |
| Q44002579 | DNA sequence recognition of thiazole-containing cross-linked polyamides can be favored |
| Q73692856 | DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes |
| Q27744278 | Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G |
| Q41841517 | Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis. |
| Q33264512 | Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF. |
| Q47858791 | Distance parameters derived from time-resolved Förster resonance energy transfer measurements and their use in structural interpretations of thermodynamic quantities associated with protein-DNA interactions |
| Q33907134 | Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein |
| Q39659022 | Effects of DNA strand breaks on transcription by RNA polymerase III: insights into the role of TFIIIB and the polarity of promoter opening |
| Q21266696 | Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters |
| Q74369894 | Eukaryotic transcription factors |
| Q30700508 | Evidence that TAF-TATA box-binding protein interactions are required for activated transcription in mammalian cells |
| Q37239949 | Extrinsic interactions dominate helical propensity in coupled binding and folding of the lactose repressor protein hinge helix |
| Q41430291 | FRETmatrix: a general methodology for the simulation and analysis of FRET in nucleic acids |
| Q33268930 | Frequency distribution of TATA Box and extension sequences on human promoters |
| Q39013901 | Functional Proteins from Short Peptides: Dayhoff's Hypothesis Turns 50. |
| Q27940253 | Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex |
| Q47073194 | Functional diversity of melanopsins and their global expression in the teleost retina |
| Q38340233 | High affinity binding of MEF-2C correlates with DNA bending |
| Q34338679 | Human TATA binding protein inhibits human papillomavirus type 11 DNA replication by antagonizing E1-E2 protein complex formation on the viral origin of replication |
| Q34633867 | Identification of preferred hTBP DNA binding sites by the combinatorial method REPSA. |
| Q58065483 | Implication of 5'-flanking sequence elements in expression of a plant tRNA(Leu) gene |
| Q50324501 | In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein |
| Q64052764 | In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release |
| Q42100758 | Induction of lcc2 expression and activity by Agaricus bisporus provides defence against Trichoderma aggressivum toxic extracts |
| Q38344758 | Influence of sequence on the conformation of the B-DNA helix |
| Q37364815 | Inhibition of transcription by platinum antitumor compounds |
| Q33367135 | Insights into protein-DNA interactions through structure network analysis |
| Q32061110 | Interaction of human SRY protein with DNA: a molecular dynamics study |
| Q39695897 | Interdependent interactions between TFIIB, TATA binding protein, and DNA |
| Q74542604 | Kinetic studies of the TATA-binding protein interaction with cisplatin-modified DNA |
| Q33382888 | Lack of functional alpha-lactalbumin prevents involution in Cape fur seals and identifies the protein as an apoptotic milk factor in mammary gland involution |
| Q24815290 | Large-scale structural analysis of the core promoter in mammalian and plant genomes |
| Q74668947 | Modeling DNA deformations induced by minor groove binding proteins |
| Q35830623 | Molecular Cloning of a cDNA Encoding for Taenia solium TATA-Box Binding Protein 1 (TsTBP1) and Study of Its Interactions with the TATA-Box of Actin 5 and Typical 2-Cys Peroxiredoxin Genes. |
| Q41630766 | Molecular and biological constraints on ligand-binding affinity and specificity |
| Q34301663 | Molecular architecture of the basal transcription factor B-TFIID. |
| Q48037879 | Mouse procathepsin E gene: molecular organisation and chromosomal localisation |
| Q38465028 | Multi-platinum anti-cancer agents. Substitution-inert compounds for tumor selectivity and new targets |
| Q47854853 | Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement |
| Q41772110 | Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism |
| Q33652585 | New hopes from old drugs: revisiting DNA-binding small molecules as anticancer agents |
| Q35907663 | Novel alleles of the VERNALIZATION1 genes in wheat are associated with modulation of DNA curvature and flexibility in the promoter region |
| Q86246092 | Nucleosome structure and function |
| Q36107216 | On the discovery, biological effects, and use of Cisplatin and metallocenes in anticancer chemotherapy |
| Q36698728 | Orientation of the transcription preinitiation complex in archaea |
| Q39574692 | Polymerase (Pol) III TATA box-binding protein (TBP)-associated factor Brf binds to a surface on TBP also required for activated Pol II transcription |
| Q47829612 | Preinitation complex assembly: potentially a bumpy path. |
| Q38349510 | Progress in the design of DNA sequence-specific lexitropsins |
| Q34167723 | Progressive DNA bending is made possible by gradual changes in the torsion angle of the glycosyl bond. |
| Q34323978 | Promoter scanning for transcription inhibition with DNA-binding polyamides |
| Q45970861 | Protease footprinting analysis of ternary complex formation by human TFIIA. |
| Q39535184 | Protein and drug interactions in the minor groove of DNA. |
| Q36523051 | RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations |
| Q33840784 | Recognition of distorted DNA structures by HMG domains |
| Q34098614 | Reconfiguring the connectivity of a multiprotein complex: fusions of yeast TATA-binding protein with Brf1, and the function of transcription factor IIIB |
| Q37234015 | Regulation of the structurally dynamic N-terminal domain of progesterone receptor by protein-induced folding |
| Q37056397 | Role of the inhibitory DNA-binding surface of human TATA-binding protein in recruitment of human TFIIB family members |
| Q30390434 | SNPs in the HIV-1 TATA box and the AIDS pandemic |
| Q36678130 | Salt-mediated electrostatics in the association of TATA binding proteins to DNA: a combined molecular mechanics/Poisson-Boltzmann study |
| Q34169369 | Selective binding of the TATA box-binding protein to the TATA box-containing promoter: analysis of structural and energetic factors |
| Q44683570 | Sequence and spacing of TATA box elements are critical for accurate initiation from the beta-phaseolin promoter |
| Q34187349 | Sequence-dependence of the energetics of opening of at basepairs in DNA. |
| Q38335938 | Sequence-dependent dynamics of TATA-Box binding sites |
| Q35962767 | Sequence-specific recognition of cancer drug-DNA adducts by HMGB1a repair protein |
| Q24309698 | Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination |
| Q36652659 | Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding |
| Q30477147 | Stepwise bending of DNA by a single TATA-box binding protein. |
| Q40312845 | Stereochemical analysis of the functional significance of the conserved inverted CCAAT and TATA elements in the rat bone sialoprotein gene promoter |
| Q27651284 | Structural analysis of the genetic switch that regulates the expression of restriction-modification genes |
| Q38360498 | Structural basis of transcription initiation by RNA polymerase II. |
| Q36203432 | Structural features of DNA that determine RNA polymerase II core promoter. |
| Q27656951 | Structure of the C-terminal domain of transcription factor IIB from Trypanosoma brucei |
| Q28645866 | Systematic detection of internal symmetry in proteins using CE-Symm |
| Q27620828 | TATA element recognition by the TATA box-binding protein has been conserved throughout evolution |
| Q39451080 | TATA-Binding protein-TATA interaction is a key determinant of differential transcription of silkworm constitutive and silk gland-specific tRNA(Ala) genes |
| Q33961599 | TBP binding-induced folding of the glucocorticoid receptor AF1 domain facilitates its interaction with steroid receptor coactivator-1 |
| Q25257046 | TBP flanking sequences: asymmetry of binding, long-range effects and consensus sequences |
| Q28241935 | TBP-related factors: a paradigm of diversity in transcription initiation |
| Q52216942 | TIT for TAT: the properties of inosine and adenosine in TATA box DNA. |
| Q27738757 | The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box |
| Q38333096 | The N-terminal methionine is a major determinant of the DNA binding specificity of MEF-2C. |
| Q28909277 | The N-terminal regions of estrogen receptor alpha and beta are unstructured in vitro and show different TBP binding properties |
| Q35130533 | The Saccharomyces cerevisiae RNA polymerase III recruitment factor subunits Brf1 and Bdp1 impose a strict sequence preference for the downstream half of the TATA box. |
| Q38977021 | The Structural Basis of Transcription: 10 Years After the Nobel Prize in Chemistry |
| Q33724309 | The TBP-like factor: an alternative transcription factor in metazoa? |
| Q36900952 | The reach of linear protein-DNA dimerizers |
| Q39310951 | The regulatory role of DNA supercoiling in nucleoprotein complex assembly and genetic activity. |
| Q46929530 | The small planarization barriers for the amino group in the nucleic acid bases |
| Q27758801 | The structure of PurR mutant L54M shows an alternative route to DNA kinking |
| Q27621551 | The structure of a stable intermediate in the A left-right-arrow B DNA helix transition |
| Q48717494 | The structures of life: proteins and nucleic acids a symposium honoring the career of professor Richard E. Dickerson |
| Q36471175 | The theoretical limits of DNA sequence discrimination by linked polyamides |
| Q34622498 | Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes |
| Q42574655 | Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays |
| Q47797051 | Transcription and translation in Archaea: a mosaic of eukaryal and bacterial features |
| Q33671325 | Transcription factor IIIB: the architecture of its DNA complex, and its roles in initiation of transcription by RNA polymerase III. |
| Q33671277 | Transcription in Archaea |
| Q58733754 | Transfer RNA genes experience exceptionally elevated mutation rates |
| Q34328960 | Translational fusions with the engrailed repressor domain efficiently convert plant transcription factors into dominant-negative functions |
| Q39680309 | Uncovering ancient transcription systems with a novel evolutionary indicator. |
| Q38307266 | Virtually unidirectional binding of TBP to the AdMLP TATA box within the quaternary complex with TFIIA and TFIIB. |
| Q35892506 | cis elements that contribute to geminivirus transcriptional regulation and the efficiency of DNA replication |
| Q34510040 | μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA |
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