| scholarly article | Q13442814 |
| P356 | DOI | 10.1016/S0966-842X(01)02173-4 |
| P698 | PubMed publication ID | 11597449 |
| P2093 | author name string | T Hayashi | |
| K Kurokawa | |||
| M Ohnishi | |||
| P2860 | cites work | Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak | Q22065263 |
| Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi | Q22122357 | ||
| Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 | Q22122385 | ||
| Diarrheagenic Escherichia coli | Q24533466 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi | Q28144621 | ||
| Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution | Q28307679 | ||
| Escherichia coli that cause diarrhea: enterotoxigenic, enteropathogenic, enteroinvasive, enterohemorrhagic, and enteroadherent | Q33453483 | ||
| Molecular analysis of the plasmid-encoded hemolysin of Escherichia coli O157:H7 strain EDL 933. | Q33490539 | ||
| Pathogenicity islands and the evolution of microbes | Q33920183 | ||
| The origins and ongoing evolution of viruses | Q34106581 | ||
| Interactions between satellite bacteriophage P4 and its helpers | Q34140874 | ||
| DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages | Q36120394 | ||
| Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage | Q37176080 | ||
| The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7. | Q39724981 | ||
| bor gene of phage lambda, involved in serum resistance, encodes a widely conserved outer membrane lipoprotein | Q39835842 | ||
| Heterogeneity of genome sizes among natural isolates of Escherichia coli | Q39838683 | ||
| Evolutionary dynamics of full genome content in Escherichia coli | Q40388521 | ||
| A role for bacteriophages in the evolution and transfer of bacterial virulence determinants | Q41034498 | ||
| Pathogenicity islands: bacterial evolution in quantum leaps | Q41245669 | ||
| Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages | Q42628295 | ||
| Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak | Q42638697 | ||
| Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. | Q42645426 | ||
| EspP, a novel extracellular serine protease of enterohaemorrhagic Escherichia coli O157:H7 cleaves human coagulation factor V. | Q42658756 | ||
| Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak | Q47969070 | ||
| Adhesin regulatory genes within large, unstable DNA regions of pathogenic Escherichia coli: cross-talk between different adhesin gene clusters | Q48085486 | ||
| Parallel evolution of virulence in pathogenic Escherichia coli. | Q50120324 | ||
| Distribution of chromosome length variation in natural isolates of Escherichia coli. | Q50132004 | ||
| Chromosome of the enterohemorrhagic Escherichia coli O157:H7; comparative analysis with K-12 MG1655 revealed the acquisition of a large amount of foreign DNAs | Q73484520 | ||
| P433 | issue | 10 | |
| P921 | main subject | Escherichia coli | Q25419 |
| bacteriophage | Q165028 | ||
| P304 | page(s) | 481-485 | |
| P577 | publication date | 2001-10-01 | |
| P1433 | published in | Trends in Microbiology | Q15265732 |
| P1476 | title | Diversification of Escherichia coli genomes: are bacteriophages the major contributors? | |
| P478 | volume | 9 |
| Q63968591 | 'Blooming' in the gut: how dysbiosis might contribute to pathogen evolution |
| Q81601576 | A comparative categorization of protein function encoded in bacterial or archeal genomic islands |
| Q34314618 | Activation of prophage eib genes for immunoglobulin-binding proteins by genes from the IbrAB genetic island of Escherichia coli ECOR-9. |
| Q24678382 | An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination |
| Q28076228 | Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria |
| Q35599204 | Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages. |
| Q33770180 | Anchor-based whole genome phylogeny (ABWGP): a tool for inferring evolutionary relationship among closely related microorganisms [corrected]. |
| Q34702436 | Bacterial pathogenomics |
| Q36430603 | Bacteriophage prevalence in the genus Azospirillum and analysis of the first genome sequence of an Azospirillum brasilense integrative phage |
| Q31110190 | Biodiversity of vibrios |
| Q34987699 | Brucella evolution and taxonomy |
| Q39679646 | Burkholderia thailandensis E125 harbors a temperate bacteriophage specific for Burkholderia mallei. |
| Q35165430 | Characterization of the novel factor paa involved in the early steps of the adhesion mechanism of attaching and effacing Escherichia coli |
| Q42406138 | Characterization of verotoxin-encoding phages from Escherichia coli O103:H2 strains of bovine and human origins |
| Q37384964 | Chlamydia trachomatis diversity viewed as a tissue-specific coevolutionary arms race |
| Q37160146 | Chromobacterium sp. From the tropics: detection and diversity of phytase activity |
| Q34305223 | Collagen-like proteins in pathogenic E. coli strains |
| Q34990712 | Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved |
| Q36148371 | Community genomics in microbial ecology and evolution |
| Q64113094 | Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7 |
| Q24629452 | Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture |
| Q42620158 | Complete genome sequence of the Lactococcus lactis temperate phage phiLC3: comparative analysis of phiLC3 and its relatives in lactococci and streptococci |
| Q41911182 | Contribution of the SitABCD, MntH, and FeoB metal transporters to the virulence of avian pathogenic Escherichia coli O78 strain chi7122. |
| Q91386159 | Coordination of cohabiting phage elements supports bacteria-phage cooperation |
| Q34427628 | Correlations between bacterial ecology and mobile DNA. |
| Q43215394 | Cytolethal distending toxin type I and type IV genes are framed with lambdoid prophage genes in extraintestinal pathogenic Escherichia coli. |
| Q41911735 | Distribution, functional expression, and genetic organization of Cif, a phage-encoded type III-secreted effector from enteropathogenic and enterohemorrhagic Escherichia coli. |
| Q33426304 | Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages |
| Q35867741 | Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage |
| Q37712768 | Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing |
| Q33714500 | Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7. |
| Q41932992 | Evolution of virulence: triggering host inflammation allows invading pathogens to exclude competitors. |
| Q55106868 | Evolutionary History of Bacteriophages in the Genus Paraburkholderia. |
| Q41890675 | Evolutionary ecology of microbial wars: within-host competition and (incidental) virulence |
| Q34031750 | Evolutionary genomics of a temperate bacteriophage in an obligate intracellular bacteria (Wolbachia). |
| Q36570597 | Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes |
| Q34351036 | Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray |
| Q41826836 | Focal point theory models for dissecting dynamic duality problems of microbial infections |
| Q42094505 | Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II. |
| Q22066365 | Genome dynamics in a natural archaeal population |
| Q33284836 | Genome evolution in major Escherichia coli O157:H7 lineages |
| Q35372333 | Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104 |
| Q33428897 | Genomic Comparison of Two O111:H- Enterohemorrhagic Escherichia coli Isolates from a Historic Hemolytic-Uremic Syndrome Outbreak in Australia |
| Q58603585 | Genomic analysis of Acinetobacter baumannii prophages reveals remarkable diversity and suggests profound impact on bacterial virulence and fitness |
| Q34430712 | Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning |
| Q54424362 | Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. |
| Q37191787 | Genomic instability in regions adjacent to a highly conserved pch prophage in Escherichia coli O157:H7 generates diversity in expression patterns of the LEE pathogenicity island |
| Q37191010 | Genomic regions conserved in lineage II Escherichia coli O157:H7 strains. |
| Q81369112 | Host-dependent activation of IS1203v excision in Shiga toxin-producing Escherichia coli |
| Q34082078 | Identification of a novel prophage regulator in Escherichia coli controlling the expression of type III secretion. |
| Q33306681 | Identification of prophages in bacterial genomes by dinucleotide relative abundance difference |
| Q37008377 | Identification of the secretion and translocation domain of the enteropathogenic and enterohemorrhagic Escherichia coli effector Cif, using TEM-1 beta-lactamase as a new fluorescence-based reporter |
| Q28289474 | Importance of prophages to evolution and virulence of bacterial pathogens |
| Q33475980 | In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence |
| Q34719180 | Induction of multiple prophages from a marine bacterium: a genomic approach |
| Q37395213 | Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes |
| Q35161953 | Integration and distribution of Lactobacillus johnsonii prophages |
| Q37099280 | Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei |
| Q24600401 | Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities |
| Q41848237 | Lineage and host source are both correlated with levels of Shiga toxin 2 production by Escherichia coli O157:H7 strains. |
| Q34959280 | Majority of divergence between closely related DNA samples is due to indels |
| Q35004540 | Manipulating or superseding host recombination functions: a dilemma that shapes phage evolvability. |
| Q64271021 | May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot : spp. and spp |
| Q34862099 | MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes |
| Q36247068 | Mobile DNA in obligate intracellular bacteria |
| Q36489643 | Mobile effector proteins on phage genomes |
| Q33798852 | Modeling the infection dynamics of bacteriophages in enteric Escherichia coli: estimating the contribution of transduction to antimicrobial gene spread |
| Q34142202 | Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus'. |
| Q54324834 | Molecular prophage typing of avian pathogenic Escherichia coli. |
| Q26827355 | Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota |
| Q45203022 | Multilocus sequence typing and virulence factors analysis of Escherichia coli O157 strains in China |
| Q39755249 | Nonpathogenic Escherichia coli can contribute to the production of Shiga toxin |
| Q44665578 | Optimization of enrichment and plating procedures for the recovery of Escherichia coli O111 and O26 from minced beef. |
| Q33396677 | Origins of the Xylella fastidiosa prophage-like regions and their impact in genome differentiation |
| Q94464356 | Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes |
| Q59360291 | Phage Therapy: What Have We Learned? |
| Q33967977 | Phage as agents of lateral gene transfer |
| Q37402011 | Phage evolution and ecology |
| Q34109429 | Phage genomics: small is beautiful |
| Q40075857 | Phage therapy: An alternative to antibiotics in the age of multi-drug resistance |
| Q24562822 | Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion |
| Q41835479 | Phenotypic and genotypic characterization of verotoxin-producing Escherichia coli O103:H2 isolates from cattle and humans |
| Q33932207 | Prevalence, distribution and evolutionary significance of the IS629 insertion element in the stepwise emergence of Escherichia coli O157:H7 |
| Q34655405 | Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms |
| Q36370937 | Prophage Contribution to Bacterial Population Dynamics |
| Q24673108 | Prophage genomics |
| Q34943643 | Prophage induction and expression of prophage-encoded virulence factors in group A Streptococcus serotype M3 strain MGAS315. |
| Q34232372 | Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis |
| Q59360029 | Prophages-Prevalence, Chromosome Location and Major Genes Involved |
| Q33375389 | Rifaximin does not induce toxin production or phage-mediated lysis of Shiga toxin-producing Escherichia coli |
| Q36118037 | Role of phages in the pathogenesis of Burkholderia, or 'Where are the toxin genes in Burkholderia phages?'. |
| Q24805836 | SIGI: score-based identification of genomic islands |
| Q33325711 | Sequence variability of Campylobacter temperate bacteriophages |
| Q35869756 | Shiga toxin gene loss and transfer in vitro and in vivo during enterohemorrhagic Escherichia coli O26 infection in humans |
| Q58700804 | Spontaneously induced prophages are abundant in a naturally evolved bacterial starter culture and deliver competitive advantage to the host |
| Q36137874 | Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates |
| Q42227031 | Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of whole-genome PCR scanning and fosmid mapping |
| Q35690386 | Temperate bacteriophages affect pulsed-field gel electrophoresis patterns of Campylobacter jejuni |
| Q36506383 | Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. |
| Q33699768 | The LEE1 promoters from both enteropathogenic and enterohemorrhagic Escherichia coli can be activated by PerC-like proteins from either organism |
| Q41439465 | The Mobilome; A Major Contributor to Escherichia coli stx2-Positive O26:H11 Strains Intra-Serotype Diversity |
| Q36280855 | The Shiga toxin 2 production level in enterohemorrhagic Escherichia coli O157:H7 is correlated with the subtypes of toxin-encoding phage |
| Q42744238 | The adaptation of temperate bacteriophages to their host genomes. |
| Q33438408 | The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants |
| Q34990709 | The fundamental contribution of phages to GAS evolution, genome diversification and strain emergence |
| Q57245691 | The prophage sequences of Lactobacillus plantarum strain WCFS1 |
| Q42622028 | The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis |
| Q42564605 | The use of genomic signature distance between bacteriophages and their hosts displays evolutionary relationships and phage growth cycle determination |
| Q24542423 | Traffic at the tmRNA gene |
| Q40523019 | Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli |
| Q40408927 | Transduction of porcine enteropathogenic Escherichia coli with a derivative of a shiga toxin 2-encoding bacteriophage in a porcine ligated ileal loop system. |
| Q33258033 | Use of the lambda Red recombinase system to produce recombinant prophages carrying antibiotic resistance genes |
| Q54488945 | Variable and strain dependent colonisation of chickens by Escherichia coli O157. |
| Q44716191 | Viral abundance and a high proportion of lysogens suggest that viruses are important members of the microbial community in the Gulf of Trieste |
| Q80351439 | Viral abundance and a high proportion of lysogens suggest that viruses are important members of the microbial community in the Gulf of Trieste |
| Q58699815 | Whole genome shotgun sequencing revealed highly polymorphic genome regions and genes in Escherichia coli O157:H7 isolates collected from a single feedlot |
| Q41952522 | Why bacteriophage encode exotoxins and other virulence factors |
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