Avian MHC Evolution in the Era of Genomics: Phase 1.0.

scientific article published on 26 September 2019

Avian MHC Evolution in the Era of Genomics: Phase 1.0. is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.3390/CELLS8101152
P932PMC publication ID6829271
P698PubMed publication ID31561531

P50authorScott V. EdwardsQ20090642
Reto BurriQ59560464
Emily A O'ConnorQ88311779
P2093author name stringHelena Westerdahl
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The Mhc class II of the Black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression.Q51704934
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Blood parasites shape extreme MHC diversity in a migratory passerine.Q52321693
Complex Mhc-based mate choice in a wild passerine.Q52569857
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Extensive MHC class II B gene duplication in a passerine, the common Yellowthroat (Geothlypis trichas).Q53855058
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Major histocompatibility complex variation and mate choice in a lekking bird, the great snipe (Gallinago media)Q57775432
Evidence for sexual conflict over major histocompatibility complex diversity in a wild songbirdQ58805285
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Characterization of the MHC class II α-chain gene in ducksQ60147889
Characterization, Polymorphism, and Evolution of MHC Class II B Genes in Birds of PreyQ60234423
Evolution of Copy Number at the MHC Varies across the Avian Tree of LifeQ60949420
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Major Histocompatibility Complex (MHC) Genes and Disease Resistance in Fish.Q64933455
A polymorphic system related to but genetically independent of the chicken major histocompatibility complexQ70567977
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The "minimal essential MHC" revisited: both peptide-binding and cell surface expression level of MHC molecules are polymorphisms selected by pathogens in chickensQ74010595
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Social pairing and female mating fidelity predicted by restriction fragment length polymorphism similarity at the major histocompatibility complex in a songbirdQ79312517
Very low gene duplication rate in the yeast genomeQ81023694
Major histocompatibility complex variation in the endangered crested ibis Nipponia nippon and implications for reintroductionQ83223646
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Divergent Allele Advantage at Human MHC Genes: Signatures of Past and Ongoing SelectionQ89075998
Major histocompatibility complex variation and blood parasites in resident and migratory populations of the common yellowthroatQ89380990
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Genetic drift outweighs balancing selection in shaping post-bottleneck major histocompatibility complex variation in New Zealand robins (Petroicidae).Q38334198
Characterization and locus-specific typing of MHC class I genes in the red-billed gull (Larus scopulinus) provides evidence for major, minor, and nonclassical lociQ38337285
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Testing genotyping strategies for ultra-deep sequencing of a co-amplifying gene family: MHC class I in a passerine birdQ38386210
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The MHC of the duck (Anas platyrhynchos) contains five differentially expressed class I genesQ38512401
Extreme MHC class I diversity in the sedge warbler (Acrocephalus schoenobaenus); selection patterns and allelic divergence suggest that different genes have different functions.Q38662456
Expression and phylogenetic analyses reveal paralogous lineages of putatively classical and non-classical MHC-I genes in three sparrow species (Passer).Q38666496
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Expression profiles for genes in the turkey major histocompatibility complex B-locus.Q39416342
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Population Differences at MHC Do Not Explain Enhanced Resistance of Song Sparrows to Local ParasitesQ40414469
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Diversity of Mhc class I and IIB genes in house sparrows (Passer domesticus).Q40531531
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The chicken B locus is a minimal essential major histocompatibility complex.Q40915352
No assembly required: Full-length MHC class I allele discovery by PacBio circular consensus sequencingQ41193804
Mating patterns in seminatural populations of mice influenced by MHC genotypeQ41780565
PCR diagnostics underestimate the prevalence of avian malaria (Plasmodium relictum) in experimentally-infected passerinesQ42040772
454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher.Q42127181
Songbird genomics: analysis of 45 kb upstream of a polymorphic Mhc class II gene in red-winged blackbirds (Agelaius phoeniceus).Q42655444
Adaptive divergence of ancient gene duplicates in the avian MHC class II beta.Q42660388
In silico peptide-binding predictions of passerine MHC class I reveal similarities across distantly related species, suggesting convergence on the level of protein functionQ42684892
Gene conversion rapidly generates major histocompatibility complex diversity in recently founded bird populationsQ43506668
MHC variation is related to a sexually selected ornament, survival, and parasite resistance in common yellowthroatsQ43968586
Contrasting epidemic histories reveal pathogen-mediated balancing selection on class II MHC diversity in a wild songbirdQ34145934
Isolation of a 97-kb minimal essential MHC B locus from a new reverse-4D BAC library of the golden pheasantQ34189355
Structure and polymorphism of the major histocompatibility complex class II region in the Japanese Crested Ibis, Nipponia nipponQ34232996
Communal nesting patterns in mice implicate MHC genes in kin recognitionQ34276144
Peptide motifs of the single dominantly expressed class I molecule explain the striking MHC-determined response to Rous sarcoma virus in chickensQ34334820
Sequencing of the core MHC region of black grouse (Tetrao tetrix) and comparative genomics of the galliform MHC.Q34445773
Greater prairie chickens have a compact MHC-B with a single class IA locusQ34487966
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).Q34501830
Characterization of MHC class I in a long-distance migrant shorebird suggests multiple transcribed genes and intergenic recombination.Q34512002
A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerinesQ34529905
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Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild birdQ34977835
MHC-I affects infection intensity but not infection status with a frequent avian malaria parasite in blue titsQ34983562
Genomic organization of the crested ibis MHC provides new insight into ancestral avian MHC structureQ34997068
MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus).Q35026196
Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide bindingQ35573295
Characterization of class II β chain major histocompatibility complex genes in a family of Hawaiian honeycreepers: 'amakihi (Hemignathus virens).Q35955338
Comparative genomics of major histocompatibility complexesQ35987357
Evolution by the birth-and-death process in multigene families of the vertebrate immune systemQ36019200
Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite developmentQ36037476
MHC class Ib molecules bridge innate and acquired immunityQ36146918
A New Chicken Genome Assembly Provides Insight into Avian Genome StructureQ36194303
Coloniality and migration are related to selection on MHC genes in birds.Q36214021
Structure and polymorphisms of the major histocompatibility complex in the Oriental stork, Ciconia boycianaQ36283889
Direct determination of diploid genome sequencesQ36337332
Long-read sequence assembly of the gorilla genomeQ37036621
An MHC component to kin recognition and mate choice in birds: predictions, progress, and prospectsQ37245155
Role of diversifying selection and gene conversion in evolution of major histocompatibility complex lociQ37562112
Antigen processing and presentation: evolution from a bird's eye view.Q38062633
Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammalsQ38213566
Critical review of NGS analyses for de novo genotyping multigene families.Q38222395
A quantitative review of MHC-based mating preference: the role of diversity and dissimilarity.Q38253845
P275copyright licenseCreative Commons AttributionQ6905323
P6216copyright statuscopyrightedQ50423863
P433issue10
P921main subjectgenomicsQ222046
major histocompatibility complexQ423163
P577publication date2019-09-26
P1433published inCellsQ27724621
P1476titleAvian MHC Evolution in the Era of Genomics: Phase 1.0.
P478volume8

Reverse relations

cites work (P2860)
Q99554953Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise
Q93009026Wetter climates select for higher immune gene diversity in resident, but not migratory, songbirds