Improving lipid mapping in Genome Scale Metabolic Networks using ontologies

scientific article published on 25 March 2020

Improving lipid mapping in Genome Scale Metabolic Networks using ontologies is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S11306-020-01663-5
P932PMC publication ID7096385
P698PubMed publication ID32215752

P50authorLaetitia FouillenQ56876180
Fabien JourdanQ55966248
P2093author name stringBenoit Colsch
Florence Vinson
Justine Bertrand-Michel
Pauline Le Faouder
Corinne Pouyet
Aurélie Batut
Pierre Van Delft
Nathalie Poupin
Fanny Viars
Maxime Chazalviel
Anthony Tournadre
Arthur Moreau
Jessica Dalloux-Chioccioli
Sarah Guez
Spiro Khoury
P2860cites workConsistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic ModellingQ64250311
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HMDB: a knowledgebase for the human metabolomeQ24655295
The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reportsQ27062596
libChEBI: an API for accessing the ChEBI databaseQ27702193
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysisQ27921803
ChEBI in 2016: Improved services and an expanding collection of metabolitesQ27942676
UniChem: a unified chemical structure cross-referencing and identifier tracking systemQ28133251
Recon 2.2: from reconstruction to model of human metabolismQ28601559
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping servicesQ28842753
A community-driven global reconstruction of human metabolism.Q29614690
Metabolism dysregulation induces a specific lipid signature of nonalcoholic steatohepatitis in patientsQ33594722
The SwissLipids knowledgebase for lipid biologyQ35622724
Computational methods to identify metabolic sub-networks based on metabolomic profiles.Q38715258
Reconstruction annotation jamborees: a community approach to systems biologyQ42777265
HMDB 4.0: the human metabolome database for 2018.Q43212324
Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.Q46544317
Inferring meaningful pathways in weighted metabolic networksQ47604665
Recon3D enables a three-dimensional view of gene variation in human metabolism.Q49850956
MetExplore: collaborative edition and exploration of metabolic networks.Q52803604
P433issue4
P921main subjectmetabolic networkQ2263094
P304page(s)44
P577publication date2020-03-25
P1433published inMetabolomicsQ15764355
P1476titleImproving lipid mapping in Genome Scale Metabolic Networks using ontologies
P478volume16

Reverse relations

cites work (P2860)
Q111148886Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation
Q111803756Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis

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