SMRT sequencing analysis reveals the full-length transcripts and alternative splicing patterns in Ananas comosus var. bracteatus

scientific article published on 21 June 2019

SMRT sequencing analysis reveals the full-length transcripts and alternative splicing patterns in Ananas comosus var. bracteatus is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.7717/PEERJ.7062
P932PMC publication ID6590394
P698PubMed publication ID31275743

P2093author name stringJun Ma
Xi Li
Zhen Lin
Zhuo Huang
Lingxia Sun
Yingyuan Xiong
Meiqin Mao
Yanbin Xue
Yixuan Xiang
Yujue Zhou
P2860cites workDifferential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksQ24633890
A survey of the sorghum transcriptome using single-molecule long readsQ27315231
Hybrid error correction and de novo assembly of single-molecule sequencing readsQ28270032
Spliceosome Structure and FunctionQ29392298
GMAP: a genomic mapping and alignment program for mRNA and EST sequencesQ29616836
A single-molecule long-read survey of the human transcriptomeQ30582005
Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genomeQ30841136
nGASP--the nematode genome annotation assessment projectQ30855671
Alternative cleavage and polyadenylation: extent, regulation and functionQ34037217
FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition.Q52104057
Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of Salvia miltiorrhiza and tanshinone biosynthesis.Q53527149
Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesisQ57639118
Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditionsQ61763410
Characterization of sinapyl derivatives in pineapple (Ananas comosus [L.] Merill) juiceQ73158502
Exchange of genetic material between cells in plant tissue graftsQ34607134
Transcriptional diversity during lineage commitment of human blood progenitorsQ34626417
Functional consequences of developmentally regulated alternative splicingQ34632366
Coupling mRNA processing with transcription in time and space.Q35006630
Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.Q35134212
Transcriptome sequence analysis of an ornamental plant, Ananas comosus var. bracteatus, revealed the potential unigenes involved in terpenoid and phenylpropanoid biosynthesisQ35175118
Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.Q35195969
Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploidsQ35229385
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.Q35914259
Physiological Characterization and Comparative Transcriptome Analysis of White and Green Leaves of Ananas comosus var. bracteatusQ36251314
Alternative splicing of pre-messenger RNAs in plants in the genomic era.Q36707492
The pineapple genome and the evolution of CAM photosynthesisQ36901868
Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcriptsQ37197850
Characterization of the human ESC transcriptome by hybrid sequencingQ37395101
Bromelain, the enzyme complex of pineapple (Ananas comosus) and its clinical application. An updateQ39512624
CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression modelQ39596956
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencingQ41856334
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasetsQ41910147
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.Q42442592
Phosphorylation of the zinc finger transcriptional regulator ZAT6 by MPK6 regulates Arabidopsis seed germination under salt and osmotic stress.Q43493153
Orchestrated intron retention regulates normal granulocyte differentiation.Q47870903
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P921main subjectAnanas comosusQ1493
alternative mRNA splicing, via spliceosomeQ21114084
P304page(s)e7062
P577publication date2019-06-21
P1433published inPeerJQ2000010
P1476titleSMRT sequencing analysis reveals the full-length transcripts and alternative splicing patterns in Ananas comosus var. bracteatus
P478volume7

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