A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis

scientific article published on 25 September 2018

A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1099/MGEN.0.000222
P932PMC publication ID6321871
P698PubMed publication ID30251949

P50authorTone TonjumQ56427745
Ola BrynildsrudQ56837030
Stephan A. FryeQ41520055
Martin MaidenQ42687585
Vegard EldholmQ42858455
Odile B HarrisonQ55172585
P2093author name stringJens Eriksson
Jon Bohlin
Derek W Hood
Kristian Alfsnes
Ole Herman Ambur
P2860cites workComparative and evolutionary analysis of the bacterial homologous recombination systemsQ21092503
Restriction and sequence alterations affect DNA uptake sequence-dependent transformation in Neisseria meningitidisQ21134507
The obligate human pathogen, Neisseria gonorrhoeae, is polyploidQ21146054
Lateral gene transfer and the nature of bacterial innovationQ22122396
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencingQ24628978
Evolution via recombination: Cell-to-cell contact facilitates larger recombination events in Streptococcus pneumoniae.Q55447630
DNA transport during transformationQ64449443
GENETIC FACTORS DETERMINING COMPETENCE IN TRANSFORMATION OF NEISSERIA MENINGITIDIS. 1. A PERMANENT LOSS OF COMPETENCEQ78371350
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencingQ24629733
Bacterial gene transfer by natural genetic transformation in the environmentQ24634610
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genesQ24684053
Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteriaQ27014793
EMBOSS: the European Molecular Biology Open Software SuiteQ27860491
Fast gapped-read alignment with Bowtie 2Q27860699
The Sequence Alignment/Map format and SAMtoolsQ27860966
Steady at the wheel: conservative sex and the benefits of bacterial transformationQ28071731
Natural genetic transformation: prevalence, mechanisms and functionQ28256997
Mechanisms of, and barriers to, horizontal gene transfer between bacteriaQ28270244
Purification and characterization of the RecA protein from Neisseria gonorrhoeaeQ28477195
Trimmomatic: a flexible trimmer for Illumina sequence dataQ29547278
Mauve: multiple alignment of conserved genomic sequence with rearrangementsQ29547292
A greedy algorithm for aligning DNA sequencesQ29547622
Prokka: rapid prokaryotic genome annotationQ29616643
How clonal are bacteria?Q29618572
Mismatch induced speciation in Salmonella: model and dataQ30478696
Modelling bacterial speciationQ30478698
Genomic content of Neisseria speciesQ30978206
Natural transformation of helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable sizeQ33417645
Identification and arrangement of the DNA sequence recognized in specific transformation of Neisseria gonorrhoeaeQ33649364
Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06.Q33752108
Extensive cotransformation of natural variation into chromosomes of naturally competent Haemophilus influenzaeQ33761714
Genetic variation: molecular mechanisms and impact on microbial evolutionQ33820587
The processive kinetics of gene conversion in bacteria.Q33835884
Homeologous recombination and mismatch repair during transformation in Streptococcus pneumoniae: saturation of the Hex mismatch repair systemQ33883002
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomesQ33938527
Transformation of natural genetic variation into Haemophilus influenzae genomesQ33987435
Mutator clones of Neisseria meningitidis in epidemic serogroup A diseaseQ34028018
genoPlotR: comparative gene and genome visualization in RQ34110403
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombinationQ34168120
A high-resolution view of genome-wide pneumococcal transformationQ34311569
Inference of homologous recombination in bacteria using whole-genome sequencesQ34387014
Dialects of the DNA uptake sequence in Neisseriaceae.Q34699798
The Inner Membrane Protein PilG Interacts with DNA and the Secretin PilQ in Transformation.Q35738992
Recombinant transfer in the basic genome of Escherichia coli.Q35895593
Genetic Manipulation of Neisseria gonorrhoeaeQ35995159
Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms.Q36221168
Cloning of the recA gene of Neisseria gonorrhoeae and construction of gonococcal recA mutantsQ36229108
Transformation of type specificity of meningococci; change in heritable type induced by type-specific extracts containing desoxyribonucleic acidQ36262292
Meningococcal genome dynamics.Q36343551
Piliation changes in transformation-defective gonococciQ36351332
Sequence-specific DNA uptake in transformation of Neisseria gonorrhoeaeQ36409936
The impact of the neisserial DNA uptake sequences on genome evolution and stabilityQ36678612
Recombination and the nature of bacterial speciationQ36719090
Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidisQ36959817
Gene conversion in Neisseria gonorrhoeae: evidence for its role in pilus antigenic variationQ37056801
Genetic Transformation of Neisseria gonorrhoeae to Streptomycin ResistanceQ37393218
Transformation of Neisseria meningitidis by deoxyribonucleates from cells and from culture slime.Q37454270
Diverse functions of restriction-modification systems in addition to cellular defenseQ38087543
Molecular characterization of rifampin-resistant Neisseria meningitidisQ39867040
Addition, deletion, and substitution of long nonhomologous deoxyribonucleic acid segments by genetic transformation of Haemophilus influenzaeQ39971282
The effect of DNA sequence divergence on sexual isolation in BacillusQ41836183
Postreplication targeting of transformants by bacterial immune systems?Q42270869
A novel determinant (comA) essential for natural transformation competence in Neisseria gonorrhoeae and the effect of a comA defect on pilin variation.Q42694166
New functional identity for the DNA uptake sequence in transformation and its presence in transcriptional terminatorsQ42845597
Sexual isolation in Acinetobacter baylyi is locus-specific and varies 10,000-fold over the genomeQ43067321
REBASE--a database for DNA restriction and modification: enzymes, genes and genomesQ43214917
DprA from Neisseria meningitidis: properties and role in natural competence for transformation.Q46337710
Preparation of genomic DNA from bacteriaQ46761047
Natural transformation and phase variation modulation in Neisseria meningitidisQ47722399
Evidence against reciprocal recombination as the basis for tuf gene conversion in Salmonella enterica serovar TyphimuriumQ47772289
Frequent interspecific genetic exchange between commensal Neisseriae and Neisseria meningitidisQ47854732
Differential roles of homologous recombination pathways in Neisseria gonorrhoeae pilin antigenic variation, DNA transformation and DNA repairQ47977090
Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selectionQ48133871
Weak Epistasis May Drive Adaptation in Recombining BacteriaQ50058827
P4510describes a project that usesggplot2Q326489
P433issue11
P921main subjectNeisseria meningitidisQ154625
P577publication date2018-09-25
P1433published inMicrobial genomicsQ27726981
P1476titleA genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis
P478volume4

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cites work (P2860)
Q92900222Gauging the epidemic potential of a widely circulating non-invasive meningococcal strain in Africa
Q83228056Neighbor predation linked to natural competence fosters the transfer of large genomic regions in

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